G3521 (klhl30)


Basic Information

Item Value
gene id G3521
gene name klhl30
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4692248 ~ 4695358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU4561
TATAACAGGATTGTAGCACTGCAGAGTCAAGGCGTTGTACTTAACAGCACAGGAGCCTATCACGTATAGTTTACCGTGGCAGGCAGTCGCTGTGAAGTTCGTGACGTATTTCACTGCAGGGCATGTTCGGGCCCAGGTGTCATTGTATGGGTCATAGTGCTCAATGTCTACAAAGTCCATTGTAGTGCCTCCGATGACGTATATCTCTCCGCTGAGGGCTGCTGAGGTGTGGTTAGTCCGGGGCCGGAGCATGGGAGCCACCGTCACCCACCGTCCCTCTCTGGTGATGTACTTCCAGGTCTCTGTGGTCGACCAGGTGTTGGATTGGGAACCCCTCGAGCCCCCtaagatgagagagggagggagggagggaggg
>TU4563
TATAACAGGATTGTAGCACTGCAGAGTCAAGGCGTTGTACTTAACAGCACAGGAGCCTATCACGTATAGTTTACCGTGGCAGGCAGTCGCTGTGAAGTTCGTGACGTATTTCACTGCAGGGCATGTTCGGGCCCAGGTGTCATTGTATGGGTCATAGTGCTCAATGTCTACAAAGTCCATTGTAGTGCCTGTGGAGAGAAAACACTGGTGTTTAACTGACCCGACCaatatggagaaaaaaaacgtCAACTTATTATGACAAAGCATATCTATCGCTGTAGATCGGGCAGGCTGCAGAGGTTTACAGGTCTGCACAGTGTAGAGAATTAGTCTAGATCTAATCGGTCTACTTCCTATTGGTCTTGTTCCTATAGGTCTAGTTCCGATAGGAGACTATTATAGGTCTAGTTTCTATAGGTCTATTATGGGTTTATTATAGGTCTAATATAGATCTAGTATAGGTCTATTATAGGTCTATTATCGGTATATTATAGGTCTATTATAGGTCTATTATAGGTCTAGTTCTTATAGGTCTATTATAGGTCTATTATAGGTCTATTATAGGTCTAGTTCCTATAGGTCTATTATAGGTCTAGTTCTTATAGGTCTATTATAGGTCTAGTTCTAATAGGTCTATTATAGGTCTATTATAGGTCTAGTTCCTATAGGTCTATTATAGGTCTAGTTCTTATAGGTCAATTTTAGGTCTAGTTCCTATAGGTCTATAATAGGTATATTATTGTTCTGTTATAGGTCTATTATATGTCTATTATTGGTCTATTATAGGTCTAGTTCCTATAGGTCTATAATATGTATAGTATTGGTCTATTATAGGTCTATTTTTGGTCTATTATAGGTATATTATAGGTCTAGTTCCTATAGTTCCTATTTGTCTCTTTCCTCCGATGACGTATATCTCTCCGCTGAGGGCTGCTGAGGTGTGGTTAGTCCGGGGCCGGAGCATGGGAGCCACCGTCACCCACCGTCCCTCTCTGGTGATGTACTTCCAGGTCTCTGTGGTCGACCAGGTGTTGGATTGGGAACCCCTCGAGCCCCCtaagatgagagagggagggagggagggaggg

Function

symbol description
klhl30 Orthologous to human KLHL30 (kelch like family member 30).

NR:

description
kelch-like protein 30

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4561 False 376 lncRNA 0.34 2 4692248 4695358
TU4563 True 1088 lncRNA 0.57 3 4692248 4695358

Neighbor

gene id symbol gene type direction distance location
im:7152348 LOC106573986 coding upstream 839239 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 844289 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 844554 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 866383 3822517 ~ 3826226 (+)
bcl6aa LOC106574104 coding upstream 1067666 3602663 ~ 3624582 (+)
agxta LOC105025628 coding downstream 253369 4948727 ~ 4957086 (+)
LOC110526525 LOC106613452 coding downstream 968813 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 1863709 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 1988741 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 2333192 7028550 ~ 7056518 (+)
G3416 NA non-coding upstream 65448 4588656 ~ 4626800 (+)
G3427 NA non-coding upstream 79469 4611590 ~ 4612779 (+)
G3417 NA non-coding upstream 98659 4592685 ~ 4593589 (+)
G3377 NA non-coding upstream 194057 4489992 ~ 4498191 (+)
G3375 NA non-coding upstream 202328 4482723 ~ 4489920 (+)
G3522 NA non-coding downstream 230 4695588 ~ 4700054 (+)
G3540 NA non-coding downstream 53000 4748358 ~ 4816025 (+)
G3544 NA non-coding downstream 66891 4762249 ~ 4762604 (+)
G3569 NA non-coding downstream 111663 4807021 ~ 4807264 (+)
G3575 NA non-coding downstream 119668 4815026 ~ 4820692 (+)
G3351 NA other upstream 250340 4439966 ~ 4441908 (+)
G3234 NA other upstream 292804 4398904 ~ 4399444 (+)
G3176 NA other upstream 514175 4175323 ~ 4178073 (+)
G2464 NA other upstream 1188667 3503269 ~ 3503581 (+)
G2343 NA other upstream 1476014 3214697 ~ 3216234 (+)
G3596 NA other downstream 159163 4854521 ~ 4856248 (+)
G3597 NA other downstream 161167 4856525 ~ 4857065 (+)
G5276 NA other downstream 1822124 6517482 ~ 6518189 (+)
G5581 NA other downstream 2115636 6810994 ~ 6811621 (+)
G6434 NA other downstream 3029688 7725046 ~ 7725609 (+)

Expression


Co-expression Network