G3580


Basic Information

Item Value
gene id G3580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4827940 ~ 4828266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU4663
TCATCTCAACTCTCCCTCACTCACAACCACAGACTCatctcaactctCCCTCACTCACAACCACAGACTCATCTCAACTCTCCCTCACTCACAACCACAGACTCTTCCACAGACTCATCTCAACTCTCCCTCACTCACAACCACAGACTCATCCACAGACTAATCTCaactctccctcactcactcacaaccacagactcatctcatctctccctcagtCACCTCtgaatcctctcctctctcttacaGTATTTACTCAACctag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4663 True 265 lncRNA 0.40 2 4827940 4828266

Neighbor

gene id symbol gene type direction distance location
im:7152348 LOC106573986 coding upstream 974931 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 979981 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 980246 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 1002075 3822517 ~ 3826226 (+)
bcl6aa LOC106574104 coding upstream 1203358 3602663 ~ 3624582 (+)
agxta LOC105025628 coding downstream 120461 4948727 ~ 4957086 (+)
LOC110526525 LOC106613452 coding downstream 835905 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 1730801 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 1855833 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 2200284 7028550 ~ 7056518 (+)
G3576 NA non-coding upstream 4782 4822066 ~ 4823158 (+)
G3575 NA non-coding upstream 7248 4815026 ~ 4820692 (+)
G3540 NA non-coding upstream 11915 4748358 ~ 4816025 (+)
G3569 NA non-coding upstream 20676 4807021 ~ 4807264 (+)
G3544 NA non-coding upstream 65336 4762249 ~ 4762604 (+)
G3601 LOC106573836 non-coding downstream 41705 4869971 ~ 4871942 (+)
G3605 NA non-coding downstream 55728 4883994 ~ 4884355 (+)
G3617 NA non-coding downstream 80865 4909131 ~ 4910563 (+)
G3639 NA non-coding downstream 114199 4942465 ~ 4943847 (+)
G3695 NA non-coding downstream 256501 5084767 ~ 5085108 (+)
G3351 NA other upstream 386032 4439966 ~ 4441908 (+)
G3234 NA other upstream 428496 4398904 ~ 4399444 (+)
G3176 NA other upstream 649867 4175323 ~ 4178073 (+)
G2464 NA other upstream 1324359 3503269 ~ 3503581 (+)
G2343 NA other upstream 1611706 3214697 ~ 3216234 (+)
G3596 NA other downstream 26255 4854521 ~ 4856248 (+)
G3597 NA other downstream 28259 4856525 ~ 4857065 (+)
G5276 NA other downstream 1689216 6517482 ~ 6518189 (+)
G5581 NA other downstream 1982728 6810994 ~ 6811621 (+)
G6434 NA other downstream 2896780 7725046 ~ 7725609 (+)

Expression


Co-expression Network