G3601 (LOC106573836)


Basic Information

Item Value
gene id G3601
gene name LOC106573836
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4869971 ~ 4871942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU4691
TCGACACACTGAATAATCAACCATCCATTGTGTTGCACCACAATTTAGCTTTCATTATTTTCCAACACCTGTCCTTTGTGTTAAGGCATGGAGAGCTAAGTGAACGATTCGCTAACTTTCCGAAAGTTCCCTGGTTATCCAGCAATTACGGTTGGAGAATTCAGGATTCTGGGAATGTCCCATCTGGGAAAACCAGGGATTTTTCAAAAAAGTTACTGAAATGTTGTAACCCTGGTAACAGTATATGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATATGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATATGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATATGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATGTGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATGTGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATGTGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGGAACAGTATGTGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATGTGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTGTGGAGGTAACAGTATGTGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATATGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATGTGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATGTGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTGTGGAGGTAACAGTATGTGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATATGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATGTGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATGTGCTGATCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATGTGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATATGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATGTGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATATGCTGACCAGAGGGATGATATCTGGGTAATGTTGTAACCCTGGTAACAGTATATGCTGACCAGAGGGATGATTCCTTCCTGGTCCTTCAAGTCCGGCTTGCCCATCATGGTGTAGGACTTCCCAGATCCGGTCTGGCCATAGGCAAAGATACAGACGTTGTATCCCTCGAAGGCATGGAGCAGCATCTCCTCACCAATGTCCTTGTACACCTGCTGCTGGCCAGCAAAGTTGATGTCCTCGGGctgtggagagagaatgtgttcGATAAACATCCATCAACATGATTAACCAAGACACCACTACAATTT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4691 True 1630 lncRNA 0.45 3 4869971 4871942

Neighbor

gene id symbol gene type direction distance location
im:7152348 LOC106573986 coding upstream 1016962 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 1022012 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 1022277 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 1044106 3822517 ~ 3826226 (+)
bcl6aa LOC106574104 coding upstream 1245389 3602663 ~ 3624582 (+)
agxta LOC105025628 coding downstream 76785 4948727 ~ 4957086 (+)
LOC110526525 LOC106613452 coding downstream 792229 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 1687125 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 1812157 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 2156608 7028550 ~ 7056518 (+)
G3580 NA non-coding upstream 41705 4827940 ~ 4828266 (+)
G3576 NA non-coding upstream 46813 4822066 ~ 4823158 (+)
G3575 NA non-coding upstream 49279 4815026 ~ 4820692 (+)
G3540 NA non-coding upstream 53946 4748358 ~ 4816025 (+)
G3605 NA non-coding downstream 12052 4883994 ~ 4884355 (+)
G3617 NA non-coding downstream 37189 4909131 ~ 4910563 (+)
G3639 NA non-coding downstream 70523 4942465 ~ 4943847 (+)
G3695 NA non-coding downstream 212825 5084767 ~ 5085108 (+)
G3725 NA non-coding downstream 267187 5139129 ~ 5140516 (+)
G3597 NA other upstream 12906 4856525 ~ 4857065 (+)
G3596 NA other upstream 13723 4854521 ~ 4856248 (+)
G3351 NA other upstream 428063 4439966 ~ 4441908 (+)
G3234 NA other upstream 470527 4398904 ~ 4399444 (+)
G3176 NA other upstream 691898 4175323 ~ 4178073 (+)
G5276 NA other downstream 1645540 6517482 ~ 6518189 (+)
G5581 NA other downstream 1939052 6810994 ~ 6811621 (+)
G6434 NA other downstream 2853104 7725046 ~ 7725609 (+)
G6518 NA other downstream 3013449 7885391 ~ 7885907 (+)
G6807 NA other downstream 3164675 8036617 ~ 8037154 (+)

Expression


Co-expression Network