G3964


Basic Information

Item Value
gene id G3964
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5185439 ~ 5185821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU5171
cctctaaccactagaatacctgcctcctctaaccactagaatacctgcctcctctaaccactagactacctgcctcctctaaccactagactacatgcctcctctaaccactagactacctgcctcctctaaccactagactacctgcctcctctaaccactagactacctgcctcctctaaccactagactacctgcctcctctaaccactagactacctgcctcctctaaccactagactacatgtctcctctaaccactagactacctgcctcctctaaccactagactacatgcctcctctaaccactagactacctgcctcctctaaccactagactacctgcctcctctaaccactagactacctgcctcctctaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5171 True 383 lncRNA 0.38 1 5185439 5185821

Neighbor

gene id symbol gene type direction distance location
agxta LOC105025628 coding upstream 228353 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 1332430 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 1337480 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 1337745 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 1359574 3822517 ~ 3826226 (+)
LOC110526525 LOC106613452 coding downstream 478350 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 1373246 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 1498278 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 1842729 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 1878547 7064368 ~ 7094220 (+)
G3725 NA non-coding upstream 44923 5139129 ~ 5140516 (+)
G3695 NA non-coding upstream 100331 5084767 ~ 5085108 (+)
G3639 NA non-coding upstream 241592 4942465 ~ 4943847 (+)
G3617 NA non-coding upstream 274876 4909131 ~ 4910563 (+)
G3605 NA non-coding upstream 301084 4883994 ~ 4884355 (+)
G3972 NA non-coding downstream 4609 5190430 ~ 5190635 (+)
G4025 NA non-coding downstream 58994 5244815 ~ 5245184 (+)
G4026 NA non-coding downstream 60084 5245905 ~ 5246152 (+)
G4032 NA non-coding downstream 67636 5253457 ~ 5253796 (+)
G4033 NA non-coding downstream 68107 5253928 ~ 5254214 (+)
G3597 NA other upstream 328374 4856525 ~ 4857065 (+)
G3596 NA other upstream 329191 4854521 ~ 4856248 (+)
G3351 NA other upstream 743531 4439966 ~ 4441908 (+)
G3234 NA other upstream 785995 4398904 ~ 4399444 (+)
G3176 NA other upstream 1007366 4175323 ~ 4178073 (+)
G5276 NA other downstream 1331661 6517482 ~ 6518189 (+)
G5581 NA other downstream 1625173 6810994 ~ 6811621 (+)
G6434 NA other downstream 2539225 7725046 ~ 7725609 (+)
G6518 NA other downstream 2699570 7885391 ~ 7885907 (+)
G6807 NA other downstream 2850796 8036617 ~ 8037154 (+)

Expression


Co-expression Network