G4039


Basic Information

Item Value
gene id G4039
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5263534 ~ 5263885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU5257
acatagtctattggtaaatagcccacccattttcacctacctcatccccatactgtttttatttatttatttttttctgctcttttgcacaccaatatctctacctgtacacgaccatctgatcatttatcactccagtgttaatctgcaaaattgtaattattcgcctacctcatgccttttgcacacattgtatatagactccccctttgttttctactgtgttattgacttgttaattgtttactccatgtgtaactctgtgttgtctgctcatactgctatgctttatcttggccaggtcgcagttgcaaatgagaacttgttctcaactagcctacctggttaaata

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5257 True 352 lncRNA 0.50 1 5263534 5263885

Neighbor

gene id symbol gene type direction distance location
agxta LOC105025628 coding upstream 306448 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 1410525 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 1415575 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 1415840 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 1437669 3822517 ~ 3826226 (+)
LOC110526525 LOC106613452 coding downstream 400286 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 1295182 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 1420214 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 1764665 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 1800483 7064368 ~ 7094220 (+)
G4033 NA non-coding upstream 9320 5253928 ~ 5254214 (+)
G4032 NA non-coding upstream 9738 5253457 ~ 5253796 (+)
G4026 NA non-coding upstream 17382 5245905 ~ 5246152 (+)
G4025 NA non-coding upstream 18350 5244815 ~ 5245184 (+)
G3972 NA non-coding upstream 72899 5190430 ~ 5190635 (+)
G4057 NA non-coding downstream 28482 5292367 ~ 5292590 (+)
G4062 NA non-coding downstream 36961 5300846 ~ 5301088 (+)
G4065 NA non-coding downstream 46670 5310555 ~ 5310794 (+)
G4066 NA non-coding downstream 49646 5313531 ~ 5313758 (+)
G4119 NA non-coding downstream 65385 5329270 ~ 5329629 (+)
G3597 NA other upstream 406469 4856525 ~ 4857065 (+)
G3596 NA other upstream 407286 4854521 ~ 4856248 (+)
G3351 NA other upstream 821626 4439966 ~ 4441908 (+)
G3234 NA other upstream 864090 4398904 ~ 4399444 (+)
G3176 NA other upstream 1085461 4175323 ~ 4178073 (+)
G5276 NA other downstream 1253597 6517482 ~ 6518189 (+)
G5581 NA other downstream 1547109 6810994 ~ 6811621 (+)
G6434 NA other downstream 2461161 7725046 ~ 7725609 (+)
G6518 NA other downstream 2621506 7885391 ~ 7885907 (+)
G6807 NA other downstream 2772732 8036617 ~ 8037154 (+)

Expression


Co-expression Network