G4485


Basic Information

Item Value
gene id G4485
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5814903 ~ 5815131 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU5810
CACTGTTACCGTCCACACTGTTACTGTACACACGATTACACTCCACACTGTTACTATCCACACTGTTGCCGTCCACAACCTTACTGTACACAATGCTACCATTCCCAATACCGTACACACCGTTAATTGTTCATCACCATTCCCTAGCCGCATGTGGTTATCTAACAAGGTGGTCGTTAAGGAGATTGCTTCCCTCAACTACCTTTGTGTGTGAATAGGAAACCTACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5810 True 229 lncRNA 0.47 1 5814903 5815131

Neighbor

gene id symbol gene type direction distance location
LOC110526525 LOC106613452 coding upstream 47210 5664171 ~ 5767693 (+)
agxta LOC105025628 coding upstream 857817 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 1961894 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 1966944 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 1967209 3847623 ~ 3847694 (+)
LOC110527749 armc9 coding downstream 743936 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 868968 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 1213419 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 1249237 7064368 ~ 7094220 (+)
ankle1 LOC106574192 coding downstream 1281168 7096299 ~ 7107509 (+)
G4484 NA non-coding upstream 2738 5811950 ~ 5812165 (+)
G4459 NA non-coding upstream 40086 5774295 ~ 5774817 (+)
G4454 NA non-coding upstream 58701 5755740 ~ 5756202 (+)
G4436 NA non-coding upstream 100879 5713222 ~ 5714024 (+)
G4395 NA non-coding upstream 156823 5657440 ~ 5658080 (+)
G4596 NA non-coding downstream 51226 5866357 ~ 5866573 (+)
G4612 NA non-coding downstream 73231 5888362 ~ 5888781 (+)
G4620 NA non-coding downstream 78913 5894044 ~ 5894264 (+)
G4836 NA non-coding downstream 257166 6072297 ~ 6072507 (+)
G4928 NA non-coding downstream 367637 6182768 ~ 6187774 (+)
G3597 NA other upstream 957838 4856525 ~ 4857065 (+)
G3596 NA other upstream 958655 4854521 ~ 4856248 (+)
G3351 NA other upstream 1372995 4439966 ~ 4441908 (+)
G3234 NA other upstream 1415459 4398904 ~ 4399444 (+)
G3176 NA other upstream 1636830 4175323 ~ 4178073 (+)
G5276 NA other downstream 702351 6517482 ~ 6518189 (+)
G5581 NA other downstream 995863 6810994 ~ 6811621 (+)
G6434 NA other downstream 1909915 7725046 ~ 7725609 (+)
G6518 NA other downstream 2070260 7885391 ~ 7885907 (+)
G6807 NA other downstream 2221486 8036617 ~ 8037154 (+)

Expression


Co-expression Network