G5220


Basic Information

Item Value
gene id G5220
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6454033 ~ 6454480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU6586
gtctgataccattaaaaccatgtgtttgataccattaaaACTGTGTCTGATACCATGAAAACCATGTTTCTGATACCATGAATACCATGTGGTTTATACCATTAAAActgtgtctgataccattaaaaccatgtgtctgataccattaaaaccatgtgtctgattccattaaaaccatgtgtctgataccagtaaaaccatgtgtttgataccatgaaTACCATGTGGTTTATACCATTAAAActgtgtctgataccattaaaaccatgtggttgataccattaaaaccatgtgtctgataccattaaaaccatgtgtctgataccattaaaaccatgtgtctgataccattaaaactatgtgtttgatagcatgaaaaccatgtgtctgataccatgaaaaccatgtgtctgataccatgaaaaccatgtgtttgataccatgaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6586 True 448 lncRNA 0.39 1 6454033 6454480

Neighbor

gene id symbol gene type direction distance location
LOC110526525 LOC106613452 coding upstream 686340 5664171 ~ 5767693 (+)
agxta LOC105025628 coding upstream 1496947 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 2601024 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 2606074 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 2606339 3847623 ~ 3847694 (+)
LOC110527749 armc9 coding downstream 104587 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 229619 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 574070 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 609888 7064368 ~ 7094220 (+)
ankle1 LOC106574192 coding downstream 641819 7096299 ~ 7107509 (+)
G5212 NA non-coding upstream 5300 6448481 ~ 6448733 (+)
G5209 NA non-coding upstream 9513 6444205 ~ 6444520 (+)
G5207 NA non-coding upstream 10843 6442905 ~ 6443190 (+)
G5204 NA non-coding upstream 15196 6436951 ~ 6438837 (+)
G5203 NA non-coding upstream 19739 6434091 ~ 6434294 (+)
G5226 NA non-coding downstream 13516 6467996 ~ 6468431 (+)
G5228 NA non-coding downstream 15795 6470275 ~ 6470596 (+)
G5243 NA non-coding downstream 26706 6481186 ~ 6481424 (+)
G5246 NA non-coding downstream 33465 6487945 ~ 6488435 (+)
G5253 NA non-coding downstream 41313 6495793 ~ 6496378 (+)
G3597 NA other upstream 1596968 4856525 ~ 4857065 (+)
G3596 NA other upstream 1597785 4854521 ~ 4856248 (+)
G3351 NA other upstream 2012125 4439966 ~ 4441908 (+)
G3234 NA other upstream 2054589 4398904 ~ 4399444 (+)
G3176 NA other upstream 2275960 4175323 ~ 4178073 (+)
G5276 NA other downstream 63002 6517482 ~ 6518189 (+)
G5581 NA other downstream 356514 6810994 ~ 6811621 (+)
G6434 NA other downstream 1270566 7725046 ~ 7725609 (+)
G6518 NA other downstream 1430911 7885391 ~ 7885907 (+)
G6807 NA other downstream 1582137 8036617 ~ 8037154 (+)

Expression


Co-expression Network