G5324


Basic Information

Item Value
gene id G5324
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6623804 ~ 6629779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU6711
ttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacattctctccctctctttctcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacattctctccctctctctttcttttacagtctctctctttctcttttacagtctcttcctctctttattttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacattctctccctctctctttcttttacattctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacattctctccctctctttctcttttacagtctctccctctctttcttttacagtctctccctctctttcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacattctctccctctctctttcttttacagtctctctctttctcttttacagtctcttcctctctttattttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacagtctctccctctctctttattttacagtctcttcctctctttcttttacagtctctacctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttt
>TU6712
ttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacattctctccctctctttctcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttctcttttacagtctctccctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttt
>TU6710
ctctctctttcttttacagtctctccctctctttcttttacagtctctctccctctctttcttttacagtctctccctctctttcttttacattctctccctctctctttcttttacattctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctttcttttacattctctccctctctttcttttacagtctctccctctctcttttacagtctctcctctccttttacag
>TU6713
tctctccctctctttcttttacattctctccctctctcttttacagtctctcctctccttttacagtctctccctctctttcttttacagtctctccctgtctctttcttttacagtctctccctgtctctttcttttaaagtctctctccctctctttctcttttacagtctctccctctctttcttttaaagtctctctccctctctttctcttttacagtctctccctctctttcttttagtctctctccctctctttctcttttacagtctctccctctctttcttttaaagtctctctccctctctttctcttttacagtctctccctctctttcttttaaagtctctctccctctctttctcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctctccctctctctttcttttacagtctcttcctctctctttcttttacagtctctccctctctttcttttacagtctctctccctctctttcttttaaagtctctctccctctctctttcttttacagtctctccctctctttcttttacagtctctctccctctctctttcttttacagtctcttcctctctctttcttttacagtctctccctctctcttttacagtctctcctctccttttacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6711 False 1413 lncRNA 0.41 2 6623804 6627346
TU6712 False 407 lncRNA 0.51 3 6623804 6627346
TU6710 False 261 lncRNA 0.53 2 6626354 6629779
TU6713 True 678 lncRNA 0.41 3 6628716 6629779

Neighbor

gene id symbol gene type direction distance location
LOC110526525 LOC106613452 coding upstream 856111 5664171 ~ 5767693 (+)
agxta LOC105025628 coding upstream 1666718 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 2770795 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 2775845 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 2776110 3847623 ~ 3847694 (+)
b3gnt7 b3gnt7 coding downstream 54320 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 398771 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 434589 7064368 ~ 7094220 (+)
ankle1 LOC106574192 coding downstream 466520 7096299 ~ 7107509 (+)
LOC118966183 NA coding downstream 700673 7330452 ~ 7331042 (+)
G5304 NA non-coding upstream 44031 6578604 ~ 6579773 (+)
G5273 NA non-coding upstream 108061 6515106 ~ 6515743 (+)
G5266 NA non-coding upstream 113677 6509927 ~ 6510127 (+)
G5264 NA non-coding upstream 117616 6505988 ~ 6506188 (+)
G5255 NA non-coding upstream 125083 6498421 ~ 6498721 (+)
LOC110527749 armc9 non-coding downstream 20386 6559067 ~ 6651795 (+)
G5365 ncl non-coding downstream 112692 6742471 ~ 6747632 (+)
G5366 NA non-coding downstream 118548 6748327 ~ 6748866 (+)
G5567 NA non-coding downstream 162977 6792756 ~ 6809277 (+)
G5580 NA non-coding downstream 180265 6810044 ~ 6810274 (+)
G5276 NA other upstream 105615 6517482 ~ 6518189 (+)
G3597 NA other upstream 1766739 4856525 ~ 4857065 (+)
G3596 NA other upstream 1767556 4854521 ~ 4856248 (+)
G3351 NA other upstream 2181896 4439966 ~ 4441908 (+)
G3234 NA other upstream 2224360 4398904 ~ 4399444 (+)
G5581 NA other downstream 181215 6810994 ~ 6811621 (+)
G6434 NA other downstream 1095267 7725046 ~ 7725609 (+)
G6518 NA other downstream 1255612 7885391 ~ 7885907 (+)
G6807 NA other downstream 1406838 8036617 ~ 8037154 (+)
LOC110501328 LOC106574178 other downstream 1599518 8229189 ~ 8231566 (+)

Expression


Co-expression Network