G5846


Basic Information

Item Value
gene id G5846
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7108108 ~ 7108385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU7279
ccactaggccgtcattgaaaataagaatttgttcttaactgacttgcctaaaggtaaaataaataatatagcAGTGAACTTCAAATGGGTACACATCAGAGTTCCCTCTAGTGGTCTGATGGTGTCTATCACCACGTCAGAGTTCCCTCTAGTGGTCTGATGGTGTCTATCACCACGTCACTAGTGGTCTAGAGTTCCGTCTGATGGTGTCTATCACCATGTCAGATCAAGAGATCCAATAATTCCACTGTTTGAATCTTCGTGCAAGATAATAGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7279 True 278 lncRNA 0.42 1 7108108 7108385

Neighbor

gene id symbol gene type direction distance location
ankle1 LOC106574192 coding upstream 599 7096299 ~ 7107509 (+)
alpi.2 LOC106574193 coding upstream 13888 7064368 ~ 7094220 (+)
alpi.1 LOC106574189 coding upstream 51590 7028550 ~ 7056518 (+)
b3gnt7 b3gnt7 coding upstream 407804 6684099 ~ 6700304 (+)
LOC110527749 armc9 coding upstream 456313 6559067 ~ 6651795 (+)
LOC118966183 NA coding downstream 222067 7330452 ~ 7331042 (+)
LOC110528450 LOC106574163 coding downstream 306228 7414613 ~ 7550394 (+)
LOC110528753 LOC106574165 coding downstream 633177 7741562 ~ 7839951 (+)
LOC110528839 LOC106574168 coding downstream 732295 7840680 ~ 7882886 (+)
LOC110528925 hykk coding downstream 792376 7900761 ~ 7935217 (+)
G5822 NA non-coding upstream 23572 7031984 ~ 7084536 (+)
G5820 NA non-coding upstream 45934 7058141 ~ 7062174 (+)
G5815 NA non-coding upstream 94455 7012089 ~ 7013653 (+)
G5786 NA non-coding upstream 131441 6976249 ~ 6976667 (+)
G5780 NA non-coding upstream 138234 6969540 ~ 6969874 (+)
G5847 NA non-coding downstream 1343 7109728 ~ 7109940 (+)
G5849 NA non-coding downstream 3135 7111520 ~ 7192013 (+)
G5867 NA non-coding downstream 31156 7139541 ~ 7140409 (+)
G5868 NA non-coding downstream 32177 7140562 ~ 7141294 (+)
G5882 NA non-coding downstream 49771 7158156 ~ 7158421 (+)
G5581 NA other upstream 296487 6810994 ~ 6811621 (+)
G5276 NA other upstream 589919 6517482 ~ 6518189 (+)
G3597 NA other upstream 2251043 4856525 ~ 4857065 (+)
G3596 NA other upstream 2251860 4854521 ~ 4856248 (+)
G3351 NA other upstream 2666200 4439966 ~ 4441908 (+)
G6434 NA other downstream 616661 7725046 ~ 7725609 (+)
G6518 NA other downstream 777006 7885391 ~ 7885907 (+)
G6807 NA other downstream 928232 8036617 ~ 8037154 (+)
LOC110501328 LOC106574178 other downstream 1120912 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 other downstream 1146757 8255142 ~ 8271732 (+)

Expression


Co-expression Network