G5849


Basic Information

Item Value
gene id G5849
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7111520 ~ 7192013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU7289
gaacagtctacgactagggtggctggagtctgacgatttttagggccttcctctgacaccgcctggtatagaggtcctggatggcaggaagcttggccccggtgatgtactgggccgtacgcactaccctctgtagtgccttgcggtcggaggccgagcagttgccataccaggcagtgatgcaacccgtcaggatgctctcaatagtgcagctgtaaaatcttttgaggatctgagggacccatgccaaatcttttcagtctcctgagggggaatatgtaatgatggtgctggagttgtgcctggccgcgCAGTCATCCTGTCCTCCATCTGTCAAACTAGACCAATTTAGTGTTATAATCTAATAATCGTACAGTAGGTTGCCTTTGTGCTACGTTTGACAGACGCCCAACACTGTGAAAGAGTGATGGGTTAAAAACGTGTTAATTCCCATCTCTAATCCTTGGTAATGACAGTCTGTAGTTTATTTGTATCTAAGGCTCTATTCGATCTGTGTTGCAGAAGCGTTTGGAGATTCCGCGATaggaatgtaaaatgtcagctgAATACAGTCTCTAGTAATGCCTTTTACAATGTTAAATCACACTAACGGTGAACTATAGCGACACGGATGGAAGAGAGACCTTAGATTtgtatctcaatgagaaaaataAAGGCTGTGTTGGAAGAGGGACCTATAATATCTGCCTTTTTAAAATCCGTTTTGACCGTCAGTCAAAAAAAAGAAACCCACACAGAATCATACGAAATATACattttattctctccctctcccatagTCACATAAGAAGTCTCCACGAGCATGATCAAGATGAGATATGACGCAGTGTCTACTTACATTCTCCATAcaatactatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac
>TU7285
TACGAAATATACattttattctctccctctcccatagTCACATAAGAAGTCTCCACGAGCATGATCAAGATGAGATATGACGCAGTGTCTACTTACATTCTCCATAcaatactatacacacacacacacacacacacacacacacatacatacacacacacatacataccagAATCAGCATATCAGAACGAGATCCCCTCTGATGGTCGATTGCTGTGAAAATCTGGGACACAGTTGCATTCATTGTTCAG
>TU7286
TACGAAATATACattttattctctccctctcccatagTCACATAAGAAGTCTCCACGAGCATGATCAAGATGAGATATGACGCAGTGTCTACTTACATTCTCCATAcaatactatacacacacacacacacacacacacacacacacatacataccagAATCAGCATATCAGAACGAGATCCCCTCTGATGGTCGATTGCTGTGAAAATCTGGGACACAGTTGCATTCATTGTTCAG
>TU7287
TACGAAATATACattttattctctccctctcccatagTCACATAAGAAGTCTCCACGAGCATGATCAAGATGAGATATGACGCAGTGTCTACTTACATTCTCCATAcaatactatacacacacacacacacacacacacacacacatacatatacacacacacacacatacataccagAATCAGCATATCAGAACGAGATCCCCTCTGATGGTCGATTGCTGTGAAAATCTGGGACACAGTTGCATTCATTGTTCAG
>TU7288
TACGAAATATACattttattctctccctctcccatagTCACATAAGAAGTCTCCACGAGCATGATCAAGATGAGATATGACGCAGTGTCTACTTACATTCTCCATAcaatactatacacacacacacacacacacacacacacacacatacataccagAATCAGCATATCAGAACGAGATCCCCTCTGATGGTCGATTGCTGTGAAAATCTGGGACACAGTTGCATTCATTGTTCAGCGAGTTTTTCCACATAGTTAAACCCACCGACAGCAATGAATGTTGATTGTGACCTTTGTTGTGGTTTGGGGCCAGAGGCTT
>TU7290
TACGAAATATACattttattctctccctctcccatagTCACATAAGAAGTCTCCACGAGCATGATCAAGATGAGATATGACGCAGTGTCTACTTACATTCTCCATAcaatactatacacacacacacacacacacacacacacacatacatacacacatacataccagAATCAGCATATCAGAACGAGATCCCCTCTGATGGTCGATTGCTGTGAAAATCTGGGACACAGTTGCATTCATTGTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7289 False 1000 lncRNA 0.50 2 7111520 7192013
TU7285 False 251 lncRNA 0.41 2 7112283 7112561
TU7286 False 237 lncRNA 0.43 2 7112283 7112561
TU7287 False 257 lncRNA 0.39 2 7112283 7112561
TU7288 False 318 lncRNA 0.40 2 7112283 7112642
TU7290 True 247 lncRNA 0.54 2 7112283 7112561

Neighbor

gene id symbol gene type direction distance location
ankle1 LOC106574192 coding upstream 4011 7096299 ~ 7107509 (+)
alpi.2 LOC106574193 coding upstream 17300 7064368 ~ 7094220 (+)
alpi.1 LOC106574189 coding upstream 55002 7028550 ~ 7056518 (+)
b3gnt7 b3gnt7 coding upstream 411216 6684099 ~ 6700304 (+)
LOC110527749 armc9 coding upstream 459725 6559067 ~ 6651795 (+)
LOC118966183 NA coding downstream 138439 7330452 ~ 7331042 (+)
LOC110528450 LOC106574163 coding downstream 222600 7414613 ~ 7550394 (+)
LOC110528753 LOC106574165 coding downstream 549549 7741562 ~ 7839951 (+)
LOC110528839 LOC106574168 coding downstream 648667 7840680 ~ 7882886 (+)
LOC110528925 hykk coding downstream 708748 7900761 ~ 7935217 (+)
G5847 NA non-coding upstream 1580 7109728 ~ 7109940 (+)
G5846 NA non-coding upstream 3135 7108108 ~ 7108385 (+)
G5822 NA non-coding upstream 26984 7031984 ~ 7084536 (+)
G5820 NA non-coding upstream 49346 7058141 ~ 7062174 (+)
G5815 NA non-coding upstream 97867 7012089 ~ 7013653 (+)
G5904 NA non-coding downstream 431 7192444 ~ 7194417 (+)
G5943 NA non-coding downstream 91651 7283664 ~ 7284594 (+)
G5986 NA non-coding downstream 360336 7552349 ~ 7553098 (+)
G6426 NA non-coding downstream 504267 7696280 ~ 7696531 (+)
G6435 NA non-coding downstream 526895 7718908 ~ 7720218 (+)
G5581 NA other upstream 299899 6810994 ~ 6811621 (+)
G5276 NA other upstream 593331 6517482 ~ 6518189 (+)
G3597 NA other upstream 2254455 4856525 ~ 4857065 (+)
G3596 NA other upstream 2255272 4854521 ~ 4856248 (+)
G3351 NA other upstream 2669612 4439966 ~ 4441908 (+)
G6434 NA other downstream 533033 7725046 ~ 7725609 (+)
G6518 NA other downstream 693378 7885391 ~ 7885907 (+)
G6807 NA other downstream 844604 8036617 ~ 8037154 (+)
LOC110501328 LOC106574178 other downstream 1037284 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 other downstream 1063129 8255142 ~ 8271732 (+)

Expression


Co-expression Network