G6812


Basic Information

Item Value
gene id G6812
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8041035 ~ 8041418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU8403
gtggatcgaggcggagatggtgaacctgttctgtgaggttggaaacttgggtggccagggtctcaacggcatgtcgagcagcagacaattcctgctcgtgtctgcctagcatcgctccctggatctcgacggctgagtggagaggatccgaagtcgctgggtccattcttggtcggattcttctgttacggtgcgtgaatgaggacccaaaagcgaattaacgtaaacagagcttctttaataagaaaacaaacgtaggctcagatggaccggcaggttccgacaggacagggttgcagcaaacatgacgatagtctggttcaggcatgaacaacacaaacaagaatccgacaaggacaggaacaaaaacagagagagatatag

Function

NR:

description
PREDICTED: protein LDOC1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8403 True 384 lncRNA 0.40 1 8041035 8041418

Neighbor

gene id symbol gene type direction distance location
LOC118966768 NA coding upstream 88147 7952793 ~ 7952888 (+)
LOC110528925 hykk coding upstream 105818 7900761 ~ 7935217 (+)
LOC110528839 LOC106574168 coding upstream 158149 7840680 ~ 7882886 (+)
LOC110528753 LOC106574165 coding upstream 201101 7741562 ~ 7839951 (+)
LOC110528450 LOC106574163 coding upstream 490641 7414613 ~ 7550394 (+)
nmur1a LOC106574171 coding downstream 7577 8048995 ~ 8085970 (+)
LOC110529397 LOC106574172 coding downstream 110655 8152073 ~ 8162387 (+)
LOC100135997 LOC100135997 coding downstream 140819 8117910 ~ 8197019 (+)
LOC110529481 LOC106574173 coding downstream 146511 8187929 ~ 8191228 (+)
LOC110529566 LOC106574176 coding downstream 151264 8192682 ~ 8199666 (+)
G6803 NA non-coding upstream 7303 8033484 ~ 8033732 (+)
G6497 NA non-coding upstream 135716 7903537 ~ 7905319 (+)
G6526 NA non-coding upstream 142932 7897795 ~ 7898103 (+)
G6522 NA non-coding upstream 146791 7893755 ~ 7894244 (+)
G6501 NA non-coding upstream 195619 7844845 ~ 7845416 (+)
G6838 NA non-coding downstream 26517 8067935 ~ 8068262 (+)
G6844 NA non-coding downstream 34952 8076370 ~ 8076598 (+)
G6821 NA non-coding downstream 44611 8086029 ~ 8087745 (+)
G6807 NA other upstream 3881 8036617 ~ 8037154 (+)
G6518 NA other upstream 155128 7885391 ~ 7885907 (+)
G6434 NA other upstream 315426 7725046 ~ 7725609 (+)
G5581 NA other upstream 1229414 6810994 ~ 6811621 (+)
G5276 NA other upstream 1522846 6517482 ~ 6518189 (+)
LOC110501328 LOC106574178 other downstream 187879 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 other downstream 213724 8255142 ~ 8271732 (+)
LOC118966784 LOC106574127 other downstream 1417530 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1942357 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 2099826 10140230 ~ 10162948 (+)

Expression


Co-expression Network