G6821


Basic Information

Item Value
gene id G6821
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8086029 ~ 8087745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU8412
CATttaagcagacactcttatccagagtgacttactcAGTGCATTGACTTATGACTTTGATTTGCCTTTATCTGAAACTATTAAATCCAAGTCATAACTCTTAAAGGTATTTTGCTAAGGAAGTCCTTTATCTACTTTCCCAGAGTCAGACGAACTCATGGATACAatgtttatgtctctgcatccagtatgaaggaagttagaggcagCTTTGCGAGCCAATtataactagcattagcacaatgagaGGAAGTCTATGGTACAGCAAgctagcagttaccatagacttccagtcattgttcCAACGCTAATTAGCagttgcgctaatgctagttagcaatttcCTTCAATCTGCACGCagatatatataaaaaaggtATCTACAAGTTCACGACTCTGGGGaaatagataaagggcttcattgccaaaatcctgaagtatccctttaagagtTTAAGCTTCAGATTAATATTACGCTTCTTTCCAGTCAagtcagtgtgttgttgtgattctggacgGCCAGATGACAAGAAAGTGGGGACTCGTAGGTAGGTCGTTTCAGCtagttttatcttgttcttgataccatgtcttgttttgagttgttttgactgatgtcactTCTATGCTAacgttgcaaaaaaaaaaaaaattgctagctagcttaccaacaactgtaacagtgTATTTcagagccaacaagtgctcattgtgcaacttAAATATTGGagacaaaatatagtttacacgttgtcaacaatctaagccaaccctgtctgttttgccccatcgTTGCACACATGTTGTTTTTTGTTACTAAACAATGAATCTTTCTATTAAGGAGTAGACTACTCCACTAAAGTCATGTAttcatttacctttatttaactaacttagttaagagcaaattcttatttacaatgacagcctaggaacagtgggttaactgccttgttcaggtgcagaacgatagactttttaccttgtcagctcggggattccatcttgcaacctttcagctactagtccaaggctctaaccactacctgccacccctgaaTGTATACATTTTTACAGTATAAGATGTACAGGATAGCAAATGACAAGAAACGGGTATTGATTTTCGGAGAGTGTACACTGCCGAATGGGTGCTTCAGCAGAGCTGTGAAAAAAACTGGCCTTCTGAAGATGTGCACTGAAGTCCTGTGGGGAAAACATCAAATCTTCTGAACGCAATTTCACCAAACAAACCTTTTATCGAGGTTGGCCTCATTGAACTGTCATCCCAGCAGCTGCTAGTTTCCATCTACTAttggaggtggtgtgtgtgagcCAGGAATGTGTAAATCTGTCAGTCCTTCTGCAAGGAGCTGTCGTACCACCTCATGTTCTCATCCATCATCGCCCGAGCGACAACACCTGTGTCAGGCACAGGAAATGACCGTTTCCAATTCGCTGCTCTGACAAAACATGGACTGTACAGGCAAACGGGCAGTTACAGCCAACAAACGGATTCATCCCTTTGACCACActatcacattttcacattttcacaaacCAAAGGAGAGGGACCATCTGGTCAACAGTGGGTACAAACTGATCAACAATCTTGTACAGACTCTCACTGTTTGAGATTTTGACTGAATGCAACTGCATGATTCTATCTCTTTGCTTCTTTTTCTTGTAAATGTATACCTGTGTGATAGTTTCAGTGCAG
>TU8415
TCTGAAGATGTGCACTGAAGTCCTGTGGGGAAAACATCAAATCTTCTGAACGCAATTTCACCAAACAAACCTTTTATCGAGGTTGGCCTCATTGAACTGTCATCCCAGCAGCTGCTAGTTTCCATCTACTAttggaggtggtgtgtgtgagcCAGGAATGTGTAAATCTGTCAGTCCTTCTGCAAGGAGCTGTCGTACCACCTCATGTTCTCATCCATCATCGCCCGAGCGACAACACCTGTGTCAGGCACAGGAAATGACCGTTTCCAATTCGCTGCTCTGACAAAACATGGACTGTACAGGCAAACGGGCAGTTACAGCCAACAAACGGATTCATCCCTTTGACCACActatcacattttcacattttcacaaacCAAAGGAGAGG
>TU8417
TCTGAAGATGTGCACTGAAGTCCTGTGGGGAAAACATCAAATCTTCTGAACGCAATTTCACCAAACAAACCTTTTATCGAGGTTGGCCTCATTGAACTGTCATCCCAGCAGCTGCTAGTTTCCATCTACTAttggaggtggtgtgtgtgagcCAGGAATGTGTAAATCTGTCAGTCCTTCTGCAAGGAGCTGTCGTACCACCTCATGTTCTCATCCATCATCGCCCGAGCGACAACACCTGTGTCAGGCACAGGAAATGACCGTTTCCAATTCGCTGCTCTGACAAAACATGGACTGTACAGGCAAACGGGCAGTTACAGCCAACAAACGGATTCATCCCTTTGACCACActatcacattttcacattttcacaaacCAAAGGAGAGGGACCATCTGGTCAACAGTGGGTACAAACTGATCAACAATCTTGTACAGACTCTCACTGTTTGAGATTTTGACTGAATGCAACTGCATGATTCTATCTCTTTGCTTCTTTTTCTTGTAAATGTATACCTGTGTGATAGTTTCAGTGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8412 False 1717 lncRNA 0.53 1 8086029 8087745
TU8415 False 388 lncRNA 0.34 1 8087210 8087597
TU8417 True 536 lncRNA 0.49 1 8087210 8087745

Neighbor

gene id symbol gene type direction distance location
nmur1a LOC106574171 coding upstream 59 8048995 ~ 8085970 (+)
LOC118966768 NA coding upstream 133141 7952793 ~ 7952888 (+)
LOC110528925 hykk coding upstream 150812 7900761 ~ 7935217 (+)
LOC110528839 LOC106574168 coding upstream 203143 7840680 ~ 7882886 (+)
LOC110528753 LOC106574165 coding upstream 246095 7741562 ~ 7839951 (+)
LOC110529397 LOC106574172 coding downstream 64328 8152073 ~ 8162387 (+)
LOC100135997 LOC100135997 coding downstream 94492 8117910 ~ 8197019 (+)
LOC110529481 LOC106574173 coding downstream 100184 8187929 ~ 8191228 (+)
LOC110529566 LOC106574176 coding downstream 104937 8192682 ~ 8199666 (+)
LOC110497697 LOC106574176 coding downstream 121588 8209333 ~ 8213887 (+)
G6844 NA non-coding upstream 9431 8076370 ~ 8076598 (+)
G6838 NA non-coding upstream 17767 8067935 ~ 8068262 (+)
G6812 NA non-coding upstream 44611 8041035 ~ 8041418 (+)
G6803 NA non-coding upstream 52297 8033484 ~ 8033732 (+)
G6912 NA non-coding downstream 57301 8145046 ~ 8147477 (+)
G6946 LOC106574176 non-coding downstream 121717 8209462 ~ 8225068 (+)
G6964 NA non-coding downstream 152690 8240435 ~ 8240724 (+)
G6967 NA non-coding downstream 155538 8243283 ~ 8249184 (+)
G6807 NA other upstream 48875 8036617 ~ 8037154 (+)
G6518 NA other upstream 200122 7885391 ~ 7885907 (+)
G6434 NA other upstream 360420 7725046 ~ 7725609 (+)
G5581 NA other upstream 1274408 6810994 ~ 6811621 (+)
G5276 NA other upstream 1567840 6517482 ~ 6518189 (+)
LOC110501328 LOC106574178 other downstream 141552 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 other downstream 167397 8255142 ~ 8271732 (+)
LOC118966784 LOC106574127 other downstream 1371203 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1896030 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 2053499 10140230 ~ 10162948 (+)

Expression


Co-expression Network