G6946 (LOC106574176)


Basic Information

Item Value
gene id G6946
gene name LOC106574176
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8209462 ~ 8225068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU8566
ATGAACCTCTCAACCCCCACCAACATCAGCATGTACTTCACTCTCTACGGCATCCTGGGTGTGGAGGAAAAAGCACAACTGTTGTACACCTACATTTGGCTGGTGAAGGAATGGGAGAATGAATTTTTCAGCTGGGACCCAGTCCAATGCGGCTCTGCCAATATTTCTCTCCCCAGGGAAAGGTTCTGGTCACCAGATGTGGTAATCAATGAATTGT

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 3A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8566 True 217 lncRNA 0.36 3 8209462 8225068

Neighbor

gene id symbol gene type direction distance location
LOC110529566 LOC106574176 coding upstream 9796 8192682 ~ 8199666 (+)
LOC110529481 LOC106574173 coding upstream 18234 8187929 ~ 8191228 (+)
LOC100135997 LOC100135997 coding upstream 25431 8117910 ~ 8197019 (+)
LOC110529397 LOC106574172 coding upstream 47075 8152073 ~ 8162387 (+)
nmur1a LOC106574171 coding upstream 123492 8048995 ~ 8085970 (+)
LOC110501328 LOC106574178 coding downstream 4121 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 coding downstream 30805 8255142 ~ 8271732 (+)
LOC110529807 pfn2 coding downstream 261586 8486654 ~ 8494344 (+)
LOC110515166 ankub1 coding downstream 377657 8602725 ~ 8612667 (+)
LOC110532690 NA coding downstream 399818 8624886 ~ 8634174 (+)
G6912 NA non-coding upstream 61985 8145046 ~ 8147477 (+)
G6821 NA non-coding upstream 121717 8086029 ~ 8087745 (+)
G6844 NA non-coding upstream 132864 8076370 ~ 8076598 (+)
G6838 NA non-coding upstream 141200 8067935 ~ 8068262 (+)
G6964 NA non-coding downstream 15367 8240435 ~ 8240724 (+)
G6967 NA non-coding downstream 18215 8243283 ~ 8249184 (+)
G6969 NA non-coding downstream 27394 8252462 ~ 8252670 (+)
G6978 NA non-coding downstream 38582 8263650 ~ 8263921 (+)
G6983 NA non-coding downstream 47868 8272936 ~ 8274241 (+)
G6807 NA other upstream 172308 8036617 ~ 8037154 (+)
G6518 NA other upstream 323555 7885391 ~ 7885907 (+)
G6434 NA other upstream 483853 7725046 ~ 7725609 (+)
G5581 NA other upstream 1397841 6810994 ~ 6811621 (+)
G5276 NA other upstream 1691273 6517482 ~ 6518189 (+)
LOC118966784 LOC106574127 other downstream 1233880 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1758707 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1916176 10140230 ~ 10162948 (+)

Expression


Co-expression Network