G7009 (tsc22d2)


Basic Information

Item Value
gene id G7009
gene name tsc22d2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8371174 ~ 8373438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU8634
GTCAGAACAGCACATTACAAGGGCATTGTTAAGATATTTTCTCCAAGGCTCAGTGATAAATCACTTTCATACAGTACACCTGGCATGTGCACAGCATCTCCTTCAAataaaaaatttttaaaaaaaacccAACTGAAGTTGAAATCTAAATTCATCCTGCTAAAGATGACCGATTGTACAATTATAAGCCACAAAGAATAAACCAGGTCGCCCGACAACCGGCGATGGTGCAGGAGGCACAAAATACATGTAACACAGACAGGACATACCATAATATGCTCATACAAGAATTTACCGGGTTCAAGCTGGAGTTGTGAAATGTGTACAAAGTTTCCGTTAAGTTTCGAACGTTTCTTTATTGAAGTACAGATTGGTAAACTACAATCAGAATCTAAATGTTTGCATTCATCAAATACATTAAAACGTAACAAAAAAACTGTCTGCATatgaaataaaattttaaaaaaacacTGTTTACATGAACAAAAAGATGGGTCAAACTTCATTTTCTGCTAATGTGAGCTTCTGACTCTCCCTTCCTCTTAATCcccccctccattaCCCATCGTTCAGACTGAATAACTAACTATACGTTACAATAAGAGCGTTGGATAAAAACATGAGGTAAGAAAGTGGTTTGATTATAGATCATGCAGAACATGCCAAACAgcatcccccccccaaaaaaatatttgatgtgaaggaggaaggaggaagtgtaaaaaaaaaaaaatgttttaagtaAAAATACATAGAAGTGTGCattcaaaaataataaaaatatataggAATTACACAGCTTTGCGTCTTTGGTTACAAAGTAGGTTGAACAATTTCAcagcttttttttgtttttttacccccAGCCCAGAAATTAAATATGCGCAATAGAATTTTCAAAAAGGTTGGGGAAGTATGGCAATTTTCtctacattttttttccccccccaAAAAGAAACTATAGCAAAGGAAATGAACAGTGTTCTTCATCAAAATATAACCACCGAAAATTCAttgaagaatatatatatatatatatttgaagaACTGGTGTTCACCTGTACAAACCCTCTACGCTCTCAATACTTTACACTCTCTACAAAATGTACATTCAACCTGGATTTCATCTCATTTAAATGAACTGCCTTTTAGTGTTAGCGGTGCTATGCCATAGGAAATTGCCATTTTAAAAGAACCTATTGCCTGTACGGAACTACTTGTTGCATTAGACTACCAAAAATGTCTGACCGATAATCATAAACAGAAAGTTTTTattttctcttcttttttttgtttttaaatataagTATTTCTGTTACATTGTTCATTTACATTATGAAAATAGCAgccccaaaataaataaatgcaaacAGTAAAACTGAACTAATgaaggtatgtttttttttaaattttatttttttaacttgggtcaaagtgTGGTGGTTCTGGGAAAACTAGTCTCGCTCTTCTCACGGTGAGACACACATTCCTCTTATGGTAGGGTGAGAATCCTCTTCCCCACCTCAGTCTCTTTGTCCCTCTCATTCCCCCGTTCTTTTCCACTCACCACCAACAGCCCAGTGTTGATTTTTGGGGGGCCCTTTGGACCACCTCCAGTTATCCCGCCACAATACAGCCCATCACCTCTCTCCCCTGCGTGGGGACTCCAGGCTGCGATGTACTCGCCCCTGGCCAGTTCCCCTTCCACTGAACACGGGACGCCCGGACAAAACAATGCTTTCACAGGATGATGATGGTCTAATACTGGGAAGGcccgacgacagcagcagcacaCTGAAGCATGGCTCTTAACGCCACTCAAAAAGACAAGGGTGGCAAACAAAGGCCGATTTTGCTTCTCAATAAAACATAATCAAGTGTTGATTATGGTTGGTTAGTTGGTTGTTTGGGGACTCCTCCTCGCGTATTTCGGGGAGGTGTTTTACGGAGGCAGGTGATCACGCCGAGGTGACGTTGGGCTGCTGGAGCAGGCTGAGAGCCTGGGCTGCACCCTCCAAGTGGGGTTTGGTATTGGCGGGGGGTTGCTGCTGAGGCGGGGAGGTGCTGCCGGCCGGGCTGATTTGGGTGGACGACAGCTGGGTGAGCTGATCAGTGTTGGCCAGGGACTTGAGCACAGCGTTCTCCCGCTCCAGCTGAGAGTTCCTCTCATACAGCTCCTTGATCTGCTCCTTCAgaacctccacctcctccctcaccGCATACATCAGGTGGCTCTTCACTAG

Function

symbol description
tsc22d2 Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in paraxial mesoderm; presumptive segmental plate; and somite. Orthologous to human TSC22D2 (TSC22 domain family member 2).

NR:

description
TSC22 domain family protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8634 True 2243 lncRNA 0.41 2 8371174 8373438

Neighbor

gene id symbol gene type direction distance location
LOC110505168 LOC106574179 coding upstream 99442 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 coding upstream 139608 8229189 ~ 8231566 (+)
LOC118943893 LOC106574176 coding upstream 145907 8224365 ~ 8225267 (+)
LOC110497697 LOC106574176 coding upstream 157287 8209333 ~ 8213887 (+)
LOC110529566 LOC106574176 coding upstream 171508 8192682 ~ 8199666 (+)
LOC110529807 pfn2 coding downstream 113216 8486654 ~ 8494344 (+)
LOC110515166 ankub1 coding downstream 229287 8602725 ~ 8612667 (+)
LOC110532690 NA coding downstream 251448 8624886 ~ 8634174 (+)
LOC110519734 ankub1 coding downstream 293731 8667169 ~ 8693760 (+)
LOC118936489 ankub1 coding downstream 348132 8721570 ~ 8747704 (+)
G7001 NA non-coding upstream 64773 8305765 ~ 8306401 (+)
G6985 NA non-coding upstream 95747 8274666 ~ 8275427 (+)
G6983 NA non-coding upstream 96933 8272936 ~ 8274241 (+)
G6978 NA non-coding upstream 107253 8263650 ~ 8263921 (+)
G6969 NA non-coding upstream 118504 8252462 ~ 8252670 (+)
G7066 NA non-coding downstream 52795 8426233 ~ 8426444 (+)
G7072 NA non-coding downstream 58516 8431954 ~ 8432377 (+)
G7073 NA non-coding downstream 59026 8432464 ~ 8432705 (+)
G7081 NA non-coding downstream 70394 8443832 ~ 8444041 (+)
G7085 NA non-coding downstream 72917 8446355 ~ 8446991 (+)
G6807 NA other upstream 334020 8036617 ~ 8037154 (+)
G6518 NA other upstream 485267 7885391 ~ 7885907 (+)
G6434 NA other upstream 645565 7725046 ~ 7725609 (+)
LOC118966784 LOC106574127 other downstream 1085510 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1610337 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1767806 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 3103226 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 4865175 13238613 ~ 13295452 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000015_01405454_01407722 NA misc CI01000015 null 1404981 ~ 1409173 (+)