G8000


Basic Information

Item Value
gene id G8000
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9231526 ~ 9231756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU9803
ACTCAATACACTCTTTAAACTAATTTCCtgtatccccttctccctcatactagatctcagcctctctctttccctctgataaTGCCCACACTGTGGCAATACATGCTCCACTGTCTCTGTTTCCTGGCAATAATCACACTTTCCTGTTGGATGCTTTCCTATCGCATTTAAAGTCTTATTCAACcggctgtgtcccacccttaatctactggctgtgtcccacccttaatc

Function

NR:

description
PREDICTED: uncharacterized protein LOC107104854

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9803 True 231 lncRNA 0.51 1 9231526 9231756

Neighbor

gene id symbol gene type direction distance location
LOC110531147 cssa16h2orf72 coding upstream 10118 9218658 ~ 9221408 (+)
LOC110531220 NA coding upstream 48444 9171968 ~ 9183082 (+)
usp13 LOC106574137 coding upstream 316126 8877591 ~ 8915400 (+)
ndufb5 LOC106574141 coding upstream 360242 8868110 ~ 8871284 (+)
LOC118966103 ankub1 coding upstream 380154 8799458 ~ 8851372 (+)
psmd1 psmd1 coding downstream 8363 9240119 ~ 9300065 (+)
LOC118966743 LOC106574127 coding downstream 196761 9428517 ~ 9436879 (+)
LOC118966784 LOC106574127 coding downstream 219176 9450932 ~ 9460358 (+)
LOC118966781 LOC106574155 coding downstream 232290 9464046 ~ 9471323 (+)
LOC118936726 LOC106574155 coding downstream 244932 9476688 ~ 9477259 (+)
G7780 NA non-coding upstream 13032 9217219 ~ 9218494 (+)
G7776 NA non-coding upstream 35799 9195355 ~ 9195727 (+)
G7757 NA non-coding upstream 77683 9153538 ~ 9153843 (+)
G7740 NA non-coding upstream 100681 9130604 ~ 9130845 (+)
G7581 NA non-coding upstream 353999 8874781 ~ 8877527 (+)
G8009 NA non-coding downstream 6248 9238004 ~ 9238233 (+)
G8030 NA non-coding downstream 71336 9303092 ~ 9303588 (+)
G8031 NA non-coding downstream 72206 9303962 ~ 9304110 (+)
G8032 NA non-coding downstream 80659 9312415 ~ 9315424 (+)
G8075 NA non-coding downstream 134720 9366476 ~ 9367099 (+)
LOC110505168 LOC106574179 other upstream 975648 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1001291 8229189 ~ 8231566 (+)
G6807 NA other upstream 1194372 8036617 ~ 8037154 (+)
G6518 NA other upstream 1345619 7885391 ~ 7885907 (+)
G6434 NA other upstream 1505917 7725046 ~ 7725609 (+)
LOC110510920 LOC106574155 other downstream 752019 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 909488 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 2244908 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 4006857 13238613 ~ 13295452 (+)

Expression


Co-expression Network