G8652


Basic Information

Item Value
gene id G8652
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10222257 ~ 10224611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU10556
tgctaatttaaaaaaatgtgataCAATATCTCTGTtaaaaaaaaacgaaacaaaaaaattacaataaaaAGTCAGCTATGtaaagtaaaataacaatagtcaTCATAACACAACATTCATGTTTCCATAATGTTACAATAACAATAAGGCTTTTTTTGGAAATAACAAAGACTACAAACAGTTCCTTTCATCATTCTGTTAGTGTATATACCAATCCAAAAACCTTCCCAGAATCCATTGTAAAAGCATACTCCTGGGTATACCAAAGCACAGACCTctgagaaaaaaatacaattttgggCTTTGAGGGCTTGTTTTTGTCAGACACGTGTACATAGTGGGTAGAATCGGACCTGCTATTGTTTAGATTTCAAGTTTCGTGATGTGCAAGTCATTTTTATCGTGGACATAACTTTCACATCACAACAGATCTTCCCCAGTCATCCACAGTGGCCTTTGAGAAAAGACAGGAACCTTTCTCTGGGTTATCAACTCAGTTCCTCAAAACTTTGAACCACTGTCCTTCCACTGTTAGTAGAGAGCTAGTCTCTCTCTTTAAGTCAAGCTTGGGACATGAATGTCGTGTGAGACAGTGAGTCCAGAGGAGGCCGAGAGGAgttgatgggggaggggggggggggggggggggggcataacaTGTGGATGCGCTTTCAGTCTCAGCCTCATGGGTGCAAACTGACACCGCCAGACCAGGCACCTCCATTGTCATCCCATACCAGAGTCACACTTACAGCATACAGGAGAATAAGCAGCATGTTTAGTATTGACAGAAAACCCCCAGAAATACACATAATTTTAAGACAAAATTAACAAATGATTACAATGGGTTGTTGATCACTGTACAAGTTTGCAAAGAGAGCTCAGTTGCCGCCATTCACCATGCCAAGTTCTCCTGTGGTGATTCCACTCGGTCAATATGTTGGGCCCTGCACCAGTAAAAACTAGTCCTGAACGAAGAGTGACAGTAAAAAGTCAAGGGACTTCATTGTCATTTATCTGGTCTTGCAAGAGCGGTCTCTTTTCACCCAGTTTCCATGGTGACTGAGGCTAAGAGAGCTATATCAGTGGTTACTGTATAAACATGTTGGGGTTTGTCCTCAAGAAGCTCCACACGTCAAGTGATGGAGAAACTGAAACGGTAATTTGATTGAATCTGCATTATCCACCGCTGGCAGTCACTATATGACACCGTCATCACTTTCCCCCAGAATATTCTGTACTGCAGAAGCTCCTCTTAGCCCAAAGAGTTGAAGGGATATAGGGCTGCCCTTTGTACGAGATGATGGACATGTTGGGAGTTGAGCTTCTAAGGTTGTAACAGAACTGTGGGCAGTAGAAGTTATCTTGCTTAGAGAGAAGGATGAGTGTGGTAGGGGGTCCCGAATGGAGGTCGACTTCTTTTGCCAGTACCTTACCGTTAACTCAGTGTGTTTGTCTCATCAGAGGTGTCTGACATTTTGGGGACAATCATCTGTGTACACAGGCAACCACAGTTTTCCATCAGAAGTGTTTATAAACAACTAGGAACTGTGAACCTCTGTCCTTACATGGTAAAAAAGGCGCTTCCCCATTTAAAGCTACATCCACTCCACCATTTTCTCAGTTTTTACcaatccctttttttttttttacctcagtcACGTTCGCCCAGTTGGTTTTTCCTTCATTcactgttgtattgtttgtaaCGTAGTTAATTTTTAATAGATGTCCACGAAATGTTTACAATGTCCACCTCCACATCTGAACACTTGAGGTAAGGTTAGCAGTCCAACACTTTAATTATTCCCACCCCACAGCTTGAGCCACCACTTTTGGTTCCTTTCTTCAGAGTGAGGGCGTCAATTAGTTCTGCTGATGGAGTCATTTACGGTTTCCTCACCGACATCAAAGTCCATTGGGTCCAATTGGAATTGCACTCTtgttgacttaaaaaaaaaagaataataatctACAATTCGTTTGCTATTCTGTTGGTTGAATTTTGTTTTCtggctgctgttgttgttttcaTTTCTATGGCTCAGGAGACTGTTGAGGGGGACATAGGATTCGGGGGACGAGATGGATTTTTACGTTGCATAGTGATCAAAGCTTCCTAGGTACTCCAGACCCGCCTGGTAGCAAAACTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10556 True 2155 lncRNA 0.39 2 10222257 10224611

Neighbor

gene id symbol gene type direction distance location
gipc3 LOC106574151 coding upstream 59309 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 114369 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 120620 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 125500 10087300 ~ 10096757 (+)
LOC110533060 gnb4 coding upstream 173580 10012701 ~ 10048677 (+)
LOC110523899 LOC106574090 coding downstream 1208491 11433102 ~ 11514427 (+)
LOC110534079 LOC106574089 coding downstream 1439997 11664608 ~ 11666692 (+)
ccdc50 ccd50 coding downstream 1621108 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 1679080 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 1697965 11922576 ~ 12025076 (+)
G8651 NA non-coding upstream 181 10220344 ~ 10222076 (+)
G8600 NA non-coding upstream 84691 10137334 ~ 10137566 (+)
G8304 NA non-coding upstream 87990 10119010 ~ 10134267 (+)
G8295 NA non-coding upstream 138590 10081168 ~ 10083667 (+)
G8253 NA non-coding upstream 169181 10051041 ~ 10053076 (+)
G8695 NA non-coding downstream 75271 10299882 ~ 10301188 (+)
G8764 NA non-coding downstream 192732 10417343 ~ 10420536 (+)
G8846 NA non-coding downstream 336533 10561144 ~ 10562327 (+)
G8871 NA non-coding downstream 392618 10617229 ~ 10671287 (+)
G9241 NA non-coding downstream 458600 10683211 ~ 10683506 (+)
LOC110510920 LOC106574155 other upstream 230715 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 762304 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1966379 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1992022 8229189 ~ 8231566 (+)
LOC110538561 LOC106574035 other downstream 3014002 13238613 ~ 13295452 (+)
G12410 NA other downstream 3404252 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 3967845 14192456 ~ 14214939 (+)
G13380 NA other downstream 4454739 14679350 ~ 14679578 (+)

Expression


Co-expression Network