G8871


Basic Information

Item Value
gene id G8871
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10617229 ~ 10671287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU10788
tactaccttactgttcaaagacacttcaatcttttgtcttgcccattcaccctctgaatgacacacacacccaatccatgtctcaaggcttaaaaatcctcctttaaccagtctcctccccttcatctacacagactgaagtggatttaacaagtgacatcaataagggcatcaatgacgtcgtccccacagtgactgtacgtacatatcccaaccagaagccatggattacaggcaacatctgcatcgagctaaaggctagagctgccacttaaggagtgggagactaatccggaagcttataagaaatcccgctatgccctcagatgaaccgtcaaacaagcaaagcgtcaatacaggattaagattgaatcatactacac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10788 True 383 lncRNA 0.42 2 10617229 10671287

Neighbor

gene id symbol gene type direction distance location
gipc3 LOC106574151 coding upstream 454281 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 509341 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 515592 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 520472 10087300 ~ 10096757 (+)
LOC110533060 gnb4 coding upstream 568552 10012701 ~ 10048677 (+)
LOC110523899 LOC106574090 coding downstream 761815 11433102 ~ 11514427 (+)
LOC110534079 LOC106574089 coding downstream 993321 11664608 ~ 11666692 (+)
ccdc50 ccd50 coding downstream 1174432 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 1232404 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 1251289 11922576 ~ 12025076 (+)
G8846 NA non-coding upstream 54902 10561144 ~ 10562327 (+)
G8764 NA non-coding upstream 196693 10417343 ~ 10420536 (+)
G8695 NA non-coding upstream 316041 10299882 ~ 10301188 (+)
G8652 NA non-coding upstream 392618 10222257 ~ 10224611 (+)
G8651 NA non-coding upstream 395153 10220344 ~ 10222076 (+)
G9241 NA non-coding downstream 11924 10683211 ~ 10683506 (+)
G9242 NA non-coding downstream 12375 10683662 ~ 10684007 (+)
G9249 NA non-coding downstream 19038 10690325 ~ 10690524 (+)
G9273 NA non-coding downstream 34935 10706222 ~ 10706442 (+)
G9307 NA non-coding downstream 62483 10733770 ~ 10733980 (+)
LOC110510920 LOC106574155 other upstream 625687 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 1157276 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 2361351 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 2386994 8229189 ~ 8231566 (+)
LOC110538561 LOC106574035 other downstream 2567326 13238613 ~ 13295452 (+)
G12410 NA other downstream 2957576 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 3521169 14192456 ~ 14214939 (+)
G13380 NA other downstream 4008063 14679350 ~ 14679578 (+)

Expression


Co-expression Network