G9970 (LOC106574093)


Basic Information

Item Value
gene id G9970
gene name LOC106574093
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11359287 ~ 11360838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU11946
GTGGACCTGCAGGCTGCAGAAGGAGCAGGAGATCAGCGGGCTGGTGCAGTCTTCTCCCGTGTGGGAGTTGGAGGGCAGCGGCTCTGTGTTGTCCGGCCCGGCGCTGAAGCACATCTCTGGGACCAGCGGGTGGGTGCGGCTGCCGCAGCCGGGAGTGTGGGGGTGGTTGGGGGCACTGGGGCTGTCAGACAGGTACAGAGAGTCCTTCTGGGGCTGGATGAAACAGGGGAAGGAGGTTACATAACTTCCGGGGCTGGATGAAACAGGGGAAGGAGGTTACTTAACGTCTGGGGCTGGATGAAACAGGGGAAGGAGGTTACATAACTTCCGGGGCT
>TU11947
GTGGACCTGCAGGCTGCAGAAGGAGCAGGAGATCAGCGGGCTGGTGCAGTCTTCTCCCGTGTGGGAGTTGGAGGGCAGCGGCTCTGTGTTGTCCGGCCCGGCGCTGAAGCACATCTCTGGGACCAGCGGGTGGGTGCGGCTGCCGCAGCCGGGAGTGTGGGGGTGGTTGGGGGCACTGGGGCTGTCAGACAGGTACAGAGAGTCCTTCTGGGGCTGGATGAAACAGGGGAAGGAGGTTACATAACTTTTGGGGCTGGATGAAACAGGGGAAGGAGGTTACATAACTTCCGGGGCTGGATGAAACAGGGGAAGGAGGTTACATAACGTTTGGGGCTGGATGAAACAGGGGAAGGAGGTTACTTAACGTCCGGGGCTGGATGAAACAGGGGAAG
>TU11948
GTGGACCTGCAGGCTGCAGAAGGAGCAGGAGATCAGCGGGCTGGTGCAGTCTTCTCCCGTGTGGGAGTTGGAGGGCAGCGGCTCTGTGTTGTCCGGCCCGGCGCTGAAGCACATCTCTGGGACCAGCGGGTGGGTGCGGCTGCCGCAGCCGGGAGTGTGGGGGTGGTTGGGGGCACTGGGGCTGTCAGACAGGTACAGAGAGTCCTTCTGGGGCTGGATGAAACAGGGGAAGGAGGTTACATAACTTTTGGGGCTGGATGAAACAGGGGAAGGAGGTTACATAACGTCTGGGGCTGGATGAAACAGGGGAAGGAGGTTACATAACTTCCGGGGCTGGATGAAACAGGGGAAGGAGGTTACTTAACGTCTGGGGCTGG

Function

NR:

description
lysine-specific demethylase 4B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11946 False 335 lncRNA 0.38 2 11359287 11359781
TU11947 False 392 lncRNA 0.44 2 11359287 11360838
TU11948 True 377 lncRNA 0.39 2 11359287 11360103

Neighbor

gene id symbol gene type direction distance location
gipc3 LOC106574151 coding upstream 1196339 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 1251399 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 1257650 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 1262530 10087300 ~ 10096757 (+)
LOC110533060 gnb4 coding upstream 1310610 10012701 ~ 10048677 (+)
LOC110523899 LOC106574090 coding downstream 72264 11433102 ~ 11514427 (+)
LOC110534079 LOC106574089 coding downstream 303770 11664608 ~ 11666692 (+)
ccdc50 ccd50 coding downstream 484881 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 542853 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 561738 11922576 ~ 12025076 (+)
G9955 NA non-coding upstream 15264 11343014 ~ 11344023 (+)
G9953 NA non-coding upstream 21177 11337292 ~ 11338110 (+)
G9895 NA non-coding upstream 44365 11313312 ~ 11314922 (+)
G9935 NA non-coding upstream 57977 11300418 ~ 11301310 (+)
G9934 NA non-coding upstream 60316 11298744 ~ 11298971 (+)
G9980 NA non-coding downstream 14585 11375423 ~ 11376798 (+)
G10208 NA non-coding downstream 154347 11515185 ~ 11515414 (+)
G10223 NA non-coding downstream 173463 11534301 ~ 11534536 (+)
G10226 NA non-coding downstream 176554 11537392 ~ 11537763 (+)
G10236 NA non-coding downstream 180901 11541739 ~ 11542096 (+)
LOC110510920 LOC106574155 other upstream 1367745 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 1899334 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3103409 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 3129052 8229189 ~ 8231566 (+)
LOC110538561 LOC106574035 other downstream 1877775 13238613 ~ 13295452 (+)
G12410 NA other downstream 2268025 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2831618 14192456 ~ 14214939 (+)
G13380 NA other downstream 3318512 14679350 ~ 14679578 (+)

Expression


Co-expression Network