G10452


Basic Information

Item Value
gene id G10452
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11788440 ~ 11788748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU12466
CTACTTTAAAACAGTCCTTTCAGGATGTTGATTTGCGTTGGCAACTGATAAAGTTTTATCAGAATGTTGGTTAGACTATTTCTAATATAAAGTTGGCTCTCTGACGGTCTGGATGAGAATATCTTGTGATCAAGGACTGttttcataaagtgtctcagagtaagaGCGCTGATCTAGGATCCGTGTTTGATTTTAGGTCAAAATGTATAAGATgacgtacagatgtaggatcttaatttgagccagtttgctacagcaggaaaataatcctgcagcaacaggaaatgtgaattattacgtGTGTTATAA

Function

NR:

description
nucleotide-binding oligomerization domain-containing protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12466 True 309 lncRNA 0.47 1 11788440 11788748

Neighbor

gene id symbol gene type direction distance location
LOC110534079 LOC106574089 coding upstream 121748 11664608 ~ 11666692 (+)
LOC110523899 LOC106574090 coding upstream 274013 11433102 ~ 11514427 (+)
gipc3 LOC106574151 coding upstream 1625492 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 1680552 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 1686803 10096943 ~ 10101637 (+)
ccdc50 ccd50 coding downstream 56971 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 114943 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 133828 11922576 ~ 12025076 (+)
cpox LOC106573996 coding downstream 248977 12037725 ~ 12043817 (+)
LOC110535080 LOC106574000 coding downstream 268060 12056808 ~ 12072687 (+)
G10446 NA non-coding upstream 10880 11777210 ~ 11777560 (+)
G10441 NA non-coding upstream 19321 11768812 ~ 11769119 (+)
G10414 NA non-coding upstream 57150 11731025 ~ 11731290 (+)
G10381 NA non-coding upstream 96608 11691479 ~ 11691832 (+)
G10348 NA non-coding upstream 138382 11649789 ~ 11650058 (+)
G10455 NA non-coding downstream 1418 11790166 ~ 11790460 (+)
G10431 NA non-coding downstream 8273 11797021 ~ 11797962 (+)
G10428 NA non-coding downstream 9508 11798256 ~ 11799236 (+)
G10500 NA non-coding downstream 64886 11853634 ~ 11853865 (+)
LOC110510920 LOC106574155 other upstream 1796898 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2328487 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3532562 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1449865 13238613 ~ 13295452 (+)
G12410 NA other downstream 1840115 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2403708 14192456 ~ 14214939 (+)
G13380 NA other downstream 2890602 14679350 ~ 14679578 (+)
G13381 NA other downstream 2890950 14679698 ~ 14680027 (+)

Expression


Co-expression Network