G10598


Basic Information

Item Value
gene id G10598
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12046142 ~ 12048908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU12647
CTCAGTACATATCCAAAGGTTGGCCATATATTTACATGGATGTATTTGCTTAAGGCATTGTAAAAAACAGAATTTAAAAAGGTAACAGTACAATAATAGGTCATGTCCAGAAACTCATATATTCTACCACCTGTGTACACTTAAAAGATCTGAAATGATTGGACAGATGTAAGCAAAATAGCAACTATTCcacctagcctatcagagggAAAGGTGGAACTATCACCATATTGCTTTAGCACAGGGCTGGGCAACTGACGGCCTCTCTTTTGAAGGCCATCAGATCAATAATATGATAATAGGAACTGTCAGGGTATCAACTTactactgttgagagttagaatagaaTACACAAAGTGCAATTTCctgcatcagcagtttctcttaTGTCAAGTCACTGATAGTCATTCAATTAGCTCATGTCAGCTAAACATTTTTAGATTGCTTGTTTTAGTGGCCAGCAATCTAAACCTTTTATTATGGTGAAATTATCAGCCCGGGGCCCCTATTGAATTTGTTAATCTCAATCAGATATTAAAAACTGCACAAAAAAAAATATCTCCACCCTAATGCAAAACGTGCAAAACATTTGCTGTTAAactaccccatggcaaaatgagtagaatttcGTGAAATGAAGTAAACTTATCTGCTGTCaacctggagagctaccctcctgtaggttctcactccaaccctgttcctggagagctaccctcctgtaggttctctctccaactctgatcctagagagctaccctcctgtaggttctctctccaaccctaatctagcacaccttaTTCTAATAAGTAGCTGGTTGATGAGctgaaccaggttagttacaacagGGGTTGGAGTGAAACTGTACAAGAAGgtcgctctccaggaacaggattggagaGCCCTGGTTAAAAGGGTAGGGGCCATTTCTGGACAGGGCCATAAACCCAACCAAAATGTCTACTTCAACCAGCACATCCCAATCACAGGTCATATAGCATAGAGATAAGTGCTGCAGTTCCACAGGTCAACAAAATACATCAGTCCTCTCATACATCTGCAGTGTACAGATTACACAGGCCCCGTGCACACTCAAGTCCTACAACTGATGCATAACGCATTTGGCACAATGGTTGTGATGCAACGCAAAAAAAATCTCAACAACGCTGTGTGATTATTTTTGTAGAGACACGGCACAATTACGGTGTAAACATTATTGTGCAGACAAAGGCCGTACCTCAATATGTAGAGTGCTGTCGACAATACGCCTTCTAAAGGCAACGTTCCCAACGTTTGCTGAGATCGCATTAACAGTACACGTTGCAATGTCGGCACAATCGGGAATTACTGTTAAAATGTCAACGCACTTTGACGCGGATAGGGTTGAACCCCGGGCAAACTACATTGTCTCAAGAAATAAGTGTTTACAGGGCCATCGTCATATTACATGTATCAATGTCACTTATAATAATGAATATTACACAGATATTTAGTGTTTAGGATGTCTATATTTAGTCCCCCAGCTGCATAATTGGCATGTAAAATATACAGTCGCCCAAAAGCTGATGACATTATTGGTGAGTATTATTGGTAGTGCTGAATAGAACCAAACCAACTGCCACAACACAAAGTGCCTTCATTCACGCACACCTCATGTTATTCACACCATTATTATCAATGTAGTCGGTGTTGTTAtccgcagtaaaataaaaatgcgctcacacacacatacactgtgcGTAGTGACATTTAATACTGTATGTAGCCCAAAGAGAGAAAATGGGTAATTGACGCTGCGCTCCATGCCAGCACAGCTCCCATAGTGTCACACGGAGACTCTatgccctatttagtgcactaataCCCATATGGACGAGTCAAAattagtacactacatagggaatagggtataattTGGGATGCACCCTTAGGGAATATGGTCTGAGAATATTGACTGTCCCTGACTAATTAATATGACACTGGGATAGATCCATCCAAGTCTATGTGTACAAAGCTACTACTGGCTAACCAAAAAacttttttttcattttattttttacaattcacTCCCCGAACATTcaaaacaacatacacacacatatataatatatatatacacacacacacacacacacacacacacacactgatcagaAAGCACACAGCTTGAAATAATACTTTTTAAATGTTCATGTTTCGAAAATAACTTTAGTTATCAGATTTGATATTTCTCTCCTTTTTAGAAGTATGGAAATCAGAACAGTTCTTTTTTTACTTTACACCATTCATCAAGCCCCAAACCTCCAGCGTACTCATAACATCACTGATGTATGGCAGTATGGTTAAATAACTGTACATTTGGGTATAGCAAAATCAAACATTTGGTATCATATtcaccatccctccacccctatcCGATGGTCAGTGCAAGCATCAACGTTATTGCATCCAACATCTCTGTGTTAGTGTAGTAACATAACAGTTAGAGGGAGGTGAGCAGGAGGGTGAGACCGGGCAGGAGGATCTAAGCTCATGTGTCAAACTTATTCCACCGAGGTtttccctcctcccttcatcctGACTGACGAATTAAGGTCATTGATTAGTTAGTACCTCCCCTCAGCTGGTCTgaattgagaagaaaaaaaacaaacaccAGCAGACAgacggccctccatggaatgagtttgacacccctgatctagCTGGATGGGGTCCGGTTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12647 True 2726 lncRNA 0.40 2 12046142 12048908

Neighbor

gene id symbol gene type direction distance location
cpox LOC106573996 coding upstream 2325 12037725 ~ 12043817 (+)
LOC110534688 LOC106573995 coding upstream 21066 11922576 ~ 12025076 (+)
LOC110534540 LOC106574080 coding upstream 139429 11903691 ~ 11906713 (+)
ccdc50 ccd50 coding upstream 166876 11845719 ~ 11879266 (+)
LOC110534079 LOC106574089 coding upstream 379450 11664608 ~ 11666692 (+)
LOC110535080 LOC106574000 coding downstream 7900 12056808 ~ 12072687 (+)
LOC110535183 LOC106574001 coding downstream 66178 12115086 ~ 12147336 (+)
mindy4 fam188b coding downstream 105514 12154422 ~ 12165172 (+)
LOC110535487 NA coding downstream 201261 12250169 ~ 12253531 (+)
LOC110525067 LOC106574005 coding downstream 209060 12257968 ~ 12312639 (+)
G10521 NA non-coding upstream 144178 11901734 ~ 11901964 (+)
G10519 NA non-coding upstream 146086 11899719 ~ 11900056 (+)
G10512 NA non-coding upstream 153365 11892415 ~ 11892777 (+)
G10509 NA non-coding upstream 155563 11890172 ~ 11890579 (+)
G10510 NA non-coding upstream 156626 11889209 ~ 11889516 (+)
G10600 NA non-coding downstream 29250 12078158 ~ 12081746 (+)
G10618 LOC106573999 non-coding downstream 34675 12083583 ~ 12084503 (+)
G10657 NA non-coding downstream 116946 12165854 ~ 12166761 (+)
G10691 NA non-coding downstream 162835 12211743 ~ 12213285 (+)
G10692 LOC100380853 non-coding downstream 168448 12217356 ~ 12217585 (+)
LOC110523899 LOC106574090 other upstream 531760 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 1884856 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2054600 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2586189 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3790264 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1189705 13238613 ~ 13295452 (+)
G12410 NA other downstream 1579955 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2143548 14192456 ~ 14214939 (+)
G13380 NA other downstream 2630442 14679350 ~ 14679578 (+)
G13381 NA other downstream 2630790 14679698 ~ 14680027 (+)

Expression


Co-expression Network