G10600


Basic Information

Item Value
gene id G10600
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12078158 ~ 12081746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU12649
ATTTTCATGTTTTAAAAATGtaaggatagccaggggcacacaacATTGACATAATTTACAAGCAAAACATGTgattagtgagtccgccagatcagaggtagtagggatgaccagggttttTCTCTTGATAAGTACGTGAATTGGAGCGTTTCAGTCagagtacttttggatgtcagggacaatgtatggagtaaaatgtacattattttctttaggaatgtagttaaGTAACAGTTGTCcataatataaatagtaaagtacagatacccaaaaaacgacttacaCTTCTgttcctgcccataccataacccctccacggggcactctgttcacaacactgacatcagcaaaccactcgtccACACGGCACCAGACACGTGCGGTtatggttggacgtactgccaaattctctaaaacgatgtgggaggtggcttatggtatagAAATGAACATTCcgttatctggcaacagctctggtggacatttctgcagtcagcgtgccaactgcacactccctcatttTAGAGTAGACATTTTATTGTCCCCTGTataaatgatcatgctgtttaattagcttcttgatatgtcacacctgtcaagtggacaGGTTATcctggaaaaggagaaatgctcactaacaggaatgtaaaacatttgtgcataacattttagagaaatattgtttttgtgcgtatggaacatttctgggatcttttatttcagctcatgaaacatgggaccaacactttacatgttgcatgaaatgttttgttcagtgtagatacacatgaccaaaggtatttggacacctgctcgttgaacatctcattcaaaaatcatgggcattaatgtggagttggtcccccctttgctgctataacagcctccactcttctgggaaggctttccactagatgttggaacattgcagaggggacttgcttccattcagccacaagagcattagtgaggtcaggcactgatgttgagcgattaggcctggcttgcagtccgTGTTCCTTCCCCaagctgttgccacaaagttgtaaaCTCAGAATAATCTAGTATGTCATTGTAGGCTGTGGCGTTTTCCTTCAATGGACCTAAGGGGCCCATTCTGaaaaatgaaaaacagccccaggccattacTCCTCTTCCACcacactttacagttggcactatacatttgGGCAGGTTAagagaaatttgacaaactgacttattggaaaggtggcatcctatgacggtgccacgttgaaagtcactgagctcttcagtaaggcattctaccgccaatgtttgtctatggagattgcatggccttgtgctcaatgttatacacctgtcagcaacaggtgtggctgaaatagccaaatccactaattagAAGGGGTGTCCTCATTTGTGTATTTTGTTTATGTACAGTACtggtcaaaagttgacacacctacttatttaagggtttatttttttttactattttctacattgtagaataatagcgaagacatcaaaactatgaaataacacatatggaaggtctagtgattgtggaggccaggtcatctgacgcagcactccatcactcttcttggtcaaatagcccctctacagcctggagatgtgttgggtcattgtcctgttgaaaaacaaatgatcgtcccactaagcgcaaatcaggtgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgcctggaattctaaataaatcactgacactgtcaccagcaaagcaccatcacacctcctcctccatgcttcacagtggaaaccacacatgcggagatcatccgttcacctactctgtgtctcacaaagacacagcggttggaaccaaaaatctccaatttggactcatcagaccaaaggacagatttccaccggtctaatttaCATTGCTcacgtttcttggcccaagcaggtctcttctacttattggtgtcctttagtagtggtttctttgcagcaatttgaccatgaaggcctgattcacacagtctcctctgaacagttgatgttgagatgtatctgttacttgaactccgaataatttatttgggctgaaatttctgaggctggtaactaattaacctatcctctgaagcagaggtaactctgggtcttcctttcctgtggcggttctcatgagatccagtttcattTTAAGACCTTCAagtattaaagtaatgatggactgtcatttctctttgcttatttgacctgttcttgctataatatggacttgctcttttaccaaatagggctatattctgtataccacgcctaccttgtcacaaaacaactgattggctcaaacgcattaagaaggaaagaaattccacaaattaacaaggcacacctgttaattgaaatgcattccaggtgactacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaagacaaagggtggctactttgaagaatctcaaatatatttggattcggataacacttttttggttactacataattccatatgtgttatttcatagttgtgatgtcttcactattattctacaatgtagaaaatagtaaagataaagaaaaacccttgaatgagtaggtgttttgactggtactgtagctgTGCAGCaaggctccccatccaacctgacagagcttgagaggatctgcagagaagaatgggagaaactaaccaaatacaggtgtgccacgcttgtagcttcatacccaagaagactcaaggctgtaatcgctgccaaaggtgcttcaacaaagtactgagtaaagggtctgaatacttatgtgaaatgtattattttctaaatgttttatatatactttctgaatgcgctgtacaTCTCTTTCTTGACTTCTCAAGTTATACCATTTTCGTTCCTTTAAATCATTTCTGTCCGCAACAACATCTAAGGCTGCTGTGATCAGTTTTTGTTGTTTATAAATTAGACAAAATgtcttaaaaacctgtttttgttttgtcattatggggtattgtgtgtagattgacgagggaataaaaaacatatttaagaAACATTACtacaaggctgtaacctaacaaaatgtggggaaagtaaaggggtcggaatactttcagaaggcactatctgtatgtagctagtgagtgtgtgtgcgccaTTGCATTCAAAGGTATGTGTGAGCACACACATGCCACGTTACGTACTATGTCTTcaaaaggtgtgtgtgttcatgtatgcATATGTGTGATAACCGTGTGTGCCTATGCTTTTACACTTCACAattgtgtgttcgtgtgtgtgcacGCCATGTTATGTCCCTTCACATCTTACCCGGGGGATGAGGCTGCTGCTGTTGACTCGTCTGAAGCGTCTCTGGAGGGCGTCGTACTCCATGTCGTTGACATCTGCCTTCAGCTGCTCCACTTTCTTCCTCTCCATGAGCAGCTCCTTCAGTAGACGCTCCATCCGGGCCCTCTGGTGCAGCAGGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12649 True 3536 lncRNA 0.41 2 12078158 12081746

Neighbor

gene id symbol gene type direction distance location
LOC110535080 LOC106574000 coding upstream 5471 12056808 ~ 12072687 (+)
cpox LOC106573996 coding upstream 34341 12037725 ~ 12043817 (+)
LOC110534688 LOC106573995 coding upstream 53082 11922576 ~ 12025076 (+)
LOC110534540 LOC106574080 coding upstream 171445 11903691 ~ 11906713 (+)
ccdc50 ccd50 coding upstream 198892 11845719 ~ 11879266 (+)
LOC110535183 LOC106574001 coding downstream 33340 12115086 ~ 12147336 (+)
mindy4 fam188b coding downstream 72676 12154422 ~ 12165172 (+)
LOC110535487 NA coding downstream 168423 12250169 ~ 12253531 (+)
LOC110525067 LOC106574005 coding downstream 176222 12257968 ~ 12312639 (+)
armh1 cssa16h1orf228 coding downstream 379621 12460957 ~ 12473058 (+)
G10598 NA non-coding upstream 29250 12046142 ~ 12048908 (+)
G10521 NA non-coding upstream 176194 11901734 ~ 11901964 (+)
G10519 NA non-coding upstream 178102 11899719 ~ 11900056 (+)
G10512 NA non-coding upstream 185381 11892415 ~ 11892777 (+)
G10509 NA non-coding upstream 187579 11890172 ~ 11890579 (+)
G10618 LOC106573999 non-coding downstream 1837 12083583 ~ 12084503 (+)
G10657 NA non-coding downstream 84108 12165854 ~ 12166761 (+)
G10691 NA non-coding downstream 129997 12211743 ~ 12213285 (+)
G10692 LOC100380853 non-coding downstream 135610 12217356 ~ 12217585 (+)
G11015 NA non-coding downstream 230977 12312723 ~ 12318190 (+)
LOC110523899 LOC106574090 other upstream 563776 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 1916872 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2086616 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2618205 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3822280 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1156867 13238613 ~ 13295452 (+)
G12410 NA other downstream 1547117 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2110710 14192456 ~ 14214939 (+)
G13380 NA other downstream 2597604 14679350 ~ 14679578 (+)
G13381 NA other downstream 2597952 14679698 ~ 14680027 (+)

Expression


Co-expression Network