G10618 (LOC106573999)


Basic Information

Item Value
gene id G10618
gene name LOC106573999
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12083583 ~ 12084503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU12667
CCGCCACTAAGGCCTCGCTGGGGTGAGCTGGGTGAGGGGCTTGTGGCCATGTAGAGCGTCTGGCCCGGGGGACAGTGGACGGGGGAGTTGCTGCGGGGCCGTGTGCCCTCCAAGGTGATCTCGATCTGGTTCTTCAGGGAGCTCTTGGGAAGGTAGGGCCGGTAGATGGGCTGCTGCTGTTGGTGGTGCTGGTGTTGGACTTGGTGCTGTACCTGCTGTTGGGGTTGCACTTGGTGGGGTTGGTGCTGGGGTGAGCTATAGGGGGACTGGTAGGTGGGAGTGGCGTAGGGCGAGGGCTGATACACAGGCTGCCCGGGCGAAGGCCAAGGAGAGGGCTGGGGGCTCTGGGAGGGGGAGGGACGGAGGTAGAGGGCATTGCCGCCACTGTTGCCATAGTGACCGACGGGGATATGCAGGGCCTGGGGGGCATTGGGAAGGTTCTGGGAGAGGGTGACCGTGATGGGGTTCATGGTGTAGCGGGGAACAGGGGAGTAGGTAGGGGACATGCCCTGCatgggaggaggggtgggggtgcTGGCTGAGCGCCCTCCATGCTCCTTCATGAAGAAGGGGTTGTACCCCGGTGAGGGTGCCATGGTGGCGGGGGCCGAGAGGGGTTCCTGGAAGCCGGCCCGCGGAAGCTCGATGTGACCGTCGCTGGAGCTGTGCACCAGGGAGCGCCCACCCCCGTTGGACTTGCCCGCCTCCGGGGGGGGGTAGCCCAACTGGATGTGCAGCATGTGGTTCCGGCTCAGGCGAACCTCCTCCGGACTGTGGAACTCCCCATAGAGGTATCTGTTACTCTCCTGAGCCAGTAGGCGGCAGCATATATccagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12667 True 837 lncRNA 0.46 2 12083583 12084503

Neighbor

gene id symbol gene type direction distance location
LOC110535080 LOC106574000 coding upstream 10896 12056808 ~ 12072687 (+)
cpox LOC106573996 coding upstream 39766 12037725 ~ 12043817 (+)
LOC110534688 LOC106573995 coding upstream 58507 11922576 ~ 12025076 (+)
LOC110534540 LOC106574080 coding upstream 176870 11903691 ~ 11906713 (+)
ccdc50 ccd50 coding upstream 204317 11845719 ~ 11879266 (+)
LOC110535183 LOC106574001 coding downstream 30583 12115086 ~ 12147336 (+)
mindy4 fam188b coding downstream 69919 12154422 ~ 12165172 (+)
LOC110535487 NA coding downstream 165666 12250169 ~ 12253531 (+)
LOC110525067 LOC106574005 coding downstream 173465 12257968 ~ 12312639 (+)
armh1 cssa16h1orf228 coding downstream 376864 12460957 ~ 12473058 (+)
G10600 NA non-coding upstream 1837 12078158 ~ 12081746 (+)
G10598 NA non-coding upstream 34675 12046142 ~ 12048908 (+)
G10521 NA non-coding upstream 181619 11901734 ~ 11901964 (+)
G10519 NA non-coding upstream 183527 11899719 ~ 11900056 (+)
G10512 NA non-coding upstream 190806 11892415 ~ 11892777 (+)
G10657 NA non-coding downstream 81351 12165854 ~ 12166761 (+)
G10691 NA non-coding downstream 127240 12211743 ~ 12213285 (+)
G10692 LOC100380853 non-coding downstream 132853 12217356 ~ 12217585 (+)
G11015 NA non-coding downstream 228220 12312723 ~ 12318190 (+)
G11089 NA non-coding downstream 257504 12342007 ~ 12342286 (+)
LOC110523899 LOC106574090 other upstream 569201 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 1922297 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2092041 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2623630 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3827705 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1154110 13238613 ~ 13295452 (+)
G12410 NA other downstream 1544360 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2107953 14192456 ~ 14214939 (+)
G13380 NA other downstream 2594847 14679350 ~ 14679578 (+)
G13381 NA other downstream 2595195 14679698 ~ 14680027 (+)

Expression


Co-expression Network