G11015


Basic Information

Item Value
gene id G11015
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12312723 ~ 12318190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU13111
GGTACTTTTTATTTGTCTAGCTCCGTTGCATACAAAAGCATACACTACAAGACACACACATTTTCTTTTCTGCAGATGGATGGCTACAGTAATTGACCTGCGAGTTAAACTGACGACCTCaggtctgacctttgacctatgaAAGCTGTGTGTGGAGTGCTTTGGTCCTTACCCAGTCAGTTACATAGTCATCCACAAATACTGTTCAATTAGTATAACACCCCACCATACACATCCTTACATTTGGTGTAACATCATTCAGACTACACTATCATTGCTTAAAACCAAGAGAGAAAAATGAGACTGCAGAACACAGAATGGCGTTTTTactatttgaccaataagaatATAATTAGATTAAGATGAAGACATAGCAGTGTTTACCTCAAAGCTAGTCCGCTAATATGACATTTCACAGCTAAGACACCGTTTTATGCACAACTTTTGTTTTAATACTTCTCGGGTTGTTTGTCCATCATACTGTATGCTGGATGGTCCTCACACAAGTCAAAGGCATTCATCACAAATGTCAAGTCAGGGGCATGTTAAGTATATTGTCAAACGTTTAGATTATAATGGCTTTGGCAGTGGTTTCTATTTGTCTACATGGCTCAAGCCCAGTTGGCAGTAAGGTATGAAGTAGACATTAACTTTTGACTATACTCTATACGTACCTTTCAAATGTCCCTTTGTCTTACTCAAAATTCCTCATAAATGACAGACTGAATGAATGTGGAAAACAACCTAAGAGTTTTAGACCATCTTCTTGAATCTTAGGTGCATACAGTAGTACGCGTTTCTGCCGATATCCCCACAGTCGTCATATGGCAACCTTTGAACGTTCCCTTTTGTGGCTAAATCGAAATTAGCTGGTGTCAAATGTTGGTTTATGTATCGCCTGTAAGGGACCAGGCAAGAGGAAGACTGGGACGCTCTTACTGTAGTTCCTTACGACTTGATGCCCTCCTGAACTCTCATTATTTCCTCCTTAAGAACACTTTGCAACTTCTCATAGGACTCATCCAAGTCATCGTTGACAATGACAATGTCAAACAATCCAGGCTCATTGCACTCCTCCATGTCAATCCGTGCTGCCTCCAGGCGGCTCTGGATTTTTTCCTCCGTCTCCGTCGCTCTACCCCTCAGACGCTCTTCCAGGACCTCAATGGAGGGGGGCTGAATTGAAACATAGATTGGGTCCAGGTCAGTTTCCTTGATGTGTCTCACTCCCGCAATATCCACATCCAAAATACAAATGAGGCCCTTGGCCCTCACGTCCTGTACAGCACACTTACTTGTTCCATACAGGTTGCCAGAAAACTCATTAGTCTCAATGAATTCTCCCGTGTCAATATCCTCCTG

Function

NR:

description
guanylate kinase-like isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU13111 True 1362 lncRNA 0.34 5 12312723 12318190

Neighbor

gene id symbol gene type direction distance location
LOC110525067 LOC106574005 coding upstream 84 12257968 ~ 12312639 (+)
LOC110535487 NA coding upstream 59192 12250169 ~ 12253531 (+)
mindy4 fam188b coding upstream 147551 12154422 ~ 12165172 (+)
LOC110535183 LOC106574001 coding upstream 165387 12115086 ~ 12147336 (+)
LOC110535080 LOC106574000 coding upstream 240036 12056808 ~ 12072687 (+)
armh1 cssa16h1orf228 coding downstream 143177 12460957 ~ 12473058 (+)
LOC110536107 LOC106574012 coding downstream 166496 12484686 ~ 12496762 (+)
LOC110536612 LOC106574016 coding downstream 358543 12676733 ~ 12695295 (+)
LOC110536795 tnni3k coding downstream 384483 12702673 ~ 12765497 (+)
LOC110536960 LOC106613985 coding downstream 472017 12790207 ~ 12802143 (+)
G10692 LOC100380853 non-coding upstream 95138 12217356 ~ 12217585 (+)
G10691 NA non-coding upstream 99438 12211743 ~ 12213285 (+)
G10657 NA non-coding upstream 145962 12165854 ~ 12166761 (+)
G10618 LOC106573999 non-coding upstream 228220 12083583 ~ 12084503 (+)
G10600 NA non-coding upstream 230977 12078158 ~ 12081746 (+)
G11089 NA non-coding downstream 23817 12342007 ~ 12342286 (+)
G11099 NA non-coding downstream 36722 12354912 ~ 12355130 (+)
G11101 NA non-coding downstream 39737 12357927 ~ 12358142 (+)
G11102 NA non-coding downstream 40341 12358531 ~ 12358851 (+)
G11103 NA non-coding downstream 41037 12359227 ~ 12359453 (+)
LOC110523899 LOC106574090 other upstream 798341 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 2151437 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2321181 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2852770 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 4056845 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 920423 13238613 ~ 13295452 (+)
G12410 NA other downstream 1310673 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 1874266 14192456 ~ 14214939 (+)
G13380 NA other downstream 2361160 14679350 ~ 14679578 (+)
G13381 NA other downstream 2361508 14679698 ~ 14680027 (+)

Expression


Co-expression Network