G11539


Basic Information

Item Value
gene id G11539
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13043835 ~ 13044050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU13666
ACTCTAGGCTATGTAGCCTCTGAATTTTtatgtttaactaggcaagtccgtttagatcaaattcttattttcaatgacagcctaacccagacaacactgggccaattgtgcacccccctatgggactcacaatcacagcagattgtgatacagcctgaaatcaaaccagggtctgtagtgacacctctatcactgagatgcagtgccttagaccac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13666 True 216 lncRNA 0.34 1 13043835 13044050

Neighbor

gene id symbol gene type direction distance location
ptgfr ptgfr coding upstream 27632 13011539 ~ 13016203 (+)
LOC110537039 LOC106574022 coding upstream 109223 12895414 ~ 12934612 (+)
LOC110536960 LOC106613985 coding upstream 241692 12790207 ~ 12802143 (+)
LOC110536795 tnni3k coding upstream 278338 12702673 ~ 12765497 (+)
LOC110536612 LOC106574016 coding upstream 348540 12676733 ~ 12695295 (+)
zfyve9b LOC106574024 coding downstream 4391 13048441 ~ 13062930 (+)
LOC110537958 LOC106574029 coding downstream 49624 13093674 ~ 13104588 (+)
mknk1 LOC106574026 coding downstream 60454 13104504 ~ 13115472 (+)
LOC110538273 LOC106574027 coding downstream 73269 13117319 ~ 13118363 (+)
LOC110526761 LOC106574030 coding downstream 170721 13214771 ~ 13223903 (+)
G11494 NA non-coding upstream 41471 12962560 ~ 13002364 (+)
G11500 NA non-coding upstream 45246 12973692 ~ 12998589 (+)
G11475 NA non-coding upstream 104816 12938813 ~ 12939019 (+)
G11422 NA non-coding upstream 173649 12869398 ~ 12870186 (+)
armh1 cssa16h1orf228 non-coding upstream 577503 12460957 ~ 12473058 (+)
G11574 NA non-coding downstream 107954 13152004 ~ 13152991 (+)
G11586 NA non-coding downstream 137762 13181812 ~ 13182548 (+)
G11999 NA non-coding downstream 166414 13210464 ~ 13210813 (+)
G12000 NA non-coding downstream 167058 13211108 ~ 13211689 (+)
LOC110523899 LOC106574090 other upstream 1529453 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 2882549 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3052293 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3583882 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 4787957 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 194563 13238613 ~ 13295452 (+)
G12410 NA other downstream 584813 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 1148406 14192456 ~ 14214939 (+)
G13380 NA other downstream 1635300 14679350 ~ 14679578 (+)
G13381 NA other downstream 1635648 14679698 ~ 14680027 (+)

Expression


Co-expression Network