G12000


Basic Information

Item Value
gene id G12000
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13211108 ~ 13211689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU14194
aacttcagatgttttcaatgaggagactctcagttagatagcagatgctcagtttttccaaaaatattatttgtgtattagaaatagctccgttttgtacatcacatttggctaccaaaaaaaaaacgaaaattcagtcctcaaaacgcgaacttttttccaaattaactccataatatcgactgaaaacatggcaaacgttgtttagaatcaatcctcaaggtgtttttcacatatctcttcgatgatatatcgttcgtggaagcatggtttcccctctcaatcaaatggaaaaatacttgcacatggctttacgcaccagtttcgacgcaggacaccaggcggacacttggaaaatgtagtctcttatggtcaatcttccaatgatatgcctacaaatacgtcacaatgctgccgacatcttggggaaacggcagaaggtctaagcttattcctgtcgcattcacagccatataaggagacattagaaaacagagcttcagaaattctgctcatttcctgtttaacgtatcatcttggtttcgcctgtagaatgagttctggggcacttacagacaaaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14194 True 582 lncRNA 0.56 1 13211108 13211689

Neighbor

gene id symbol gene type direction distance location
LOC110538273 LOC106574027 coding upstream 92745 13117319 ~ 13118363 (+)
mknk1 LOC106574026 coding upstream 95636 13104504 ~ 13115472 (+)
LOC110537958 LOC106574029 coding upstream 106520 13093674 ~ 13104588 (+)
zfyve9b LOC106574024 coding upstream 148178 13048441 ~ 13062930 (+)
btf3l4 LOC105028135 coding upstream 163184 13034361 ~ 13047924 (+)
LOC110526761 LOC106574030 coding downstream 3082 13214771 ~ 13223903 (+)
LOC110538561 LOC106574035 coding downstream 48222 13238613 ~ 13295452 (+)
LOC110485223 LOC106574083 coding downstream 197593 13409282 ~ 13411290 (+)
LOC110485322 LOC106574039 coding downstream 213877 13425566 ~ 13431117 (+)
pdzk1ip1 LOC106574040 coding downstream 224327 13436016 ~ 13441528 (+)
G11999 NA non-coding upstream 295 13210464 ~ 13210813 (+)
G11586 NA non-coding upstream 28560 13181812 ~ 13182548 (+)
G11574 NA non-coding upstream 58117 13152004 ~ 13152991 (+)
G11539 NA non-coding upstream 167058 13043835 ~ 13044050 (+)
G11494 NA non-coding upstream 208744 12962560 ~ 13002364 (+)
G12007 NA non-coding downstream 18086 13229775 ~ 13231234 (+)
G12015 NA non-coding downstream 30277 13241966 ~ 13242503 (+)
G12014 NA non-coding downstream 37455 13249144 ~ 13253879 (+)
G12029 NA non-coding downstream 73553 13285242 ~ 13285464 (+)
LOC110523899 LOC106574090 other upstream 1696726 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3049822 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3219566 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3751155 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 4955230 8255142 ~ 8271732 (+)
G12410 NA other downstream 417174 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 980767 14192456 ~ 14214939 (+)
G13380 NA other downstream 1467661 14679350 ~ 14679578 (+)
G13381 NA other downstream 1468009 14679698 ~ 14680027 (+)

Expression


Co-expression Network