G12039


Basic Information

Item Value
gene id G12039
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13303018 ~ 13303237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU14239
tggtagactagcgagtattatccaggctaaaaacagggctggtatctgtgcagaaagtaaaagccgctagcagtggctaacaatgactaaatagcttgtagctaattagctggttagcttctggaggttcttgaatgtgttctaaaattgaaaataatagcgattccgtatcacattgggtgaggcaggttaccggaaggtataatctaattaaaaatcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14239 True 220 lncRNA 0.38 1 13303018 13303237

Neighbor

gene id symbol gene type direction distance location
LOC110538561 LOC106574035 coding upstream 7566 13238613 ~ 13295452 (+)
LOC110526761 LOC106574030 coding upstream 79115 13214771 ~ 13223903 (+)
LOC110538273 LOC106574027 coding upstream 184655 13117319 ~ 13118363 (+)
mknk1 LOC106574026 coding upstream 187546 13104504 ~ 13115472 (+)
LOC110537958 LOC106574029 coding upstream 198430 13093674 ~ 13104588 (+)
LOC110485223 LOC106574083 coding downstream 106045 13409282 ~ 13411290 (+)
LOC110485322 LOC106574039 coding downstream 122329 13425566 ~ 13431117 (+)
pdzk1ip1 LOC106574040 coding downstream 132779 13436016 ~ 13441528 (+)
tm2d1 LOC106574044 coding downstream 431526 13734763 ~ 13753675 (+)
LOC110508285 LOC106574085 coding downstream 837259 14140496 ~ 14144946 (+)
G12037 NA non-coding upstream 2169 13300630 ~ 13300849 (+)
G12010 NA non-coding upstream 4902 13297123 ~ 13298116 (+)
G12009 NA non-coding upstream 6052 13295573 ~ 13296966 (+)
G12035 NA non-coding upstream 11327 13291437 ~ 13291691 (+)
G12034 NA non-coding upstream 12091 13290727 ~ 13290927 (+)
G12126 NA non-coding downstream 145027 13448264 ~ 13448757 (+)
G12137 NA non-coding downstream 172666 13475903 ~ 13477133 (+)
G12332 NA non-coding downstream 230707 13533944 ~ 13534149 (+)
G12335 NA non-coding downstream 232876 13536113 ~ 13536354 (+)
G12342 NA non-coding downstream 238216 13541453 ~ 13541669 (+)
LOC110523899 LOC106574090 other upstream 1788636 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3141732 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3311476 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3843065 9450932 ~ 9460358 (+)
G12410 NA other downstream 325626 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 889219 14192456 ~ 14214939 (+)
G13380 NA other downstream 1376113 14679350 ~ 14679578 (+)
G13381 NA other downstream 1376461 14679698 ~ 14680027 (+)
G13391 NA other downstream 1396939 14700176 ~ 14700730 (+)

Expression


Co-expression Network