G12504


Basic Information

Item Value
gene id G12504
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13795935 ~ 13799297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU14844
CTGCACCGTACTGATCTGTCTGGGTGTCCTAACTGAACGCCTTCAAGGTGCTTTTATATGGACAGGAGTTgcttcacacacatacatacacacatgcgcgctaacacacacacacacaaatcaaattgtatttgtatcatgtgccgaatacaacagatgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacgttacagtgaaatgctgaatacaacagatgtagtagaccttacagtgaaatgctgaatacaacagatgtagtagaccttacagtgaaatgctgaatacaacagatgtagtagaccttacagtgaaatgctgaatacaacagatgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttactgtgaaatgctgaatacaacaggtgtggtagaccttacagtgaaatgctgaatacaacaggtgtaggtagaccttacagtgaaatgctgaatacaacaggtgtagtagacattactgtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacagctgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacagatgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacattactgtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacattacagtgaaatgctgtatacgacaggtgtagtagactttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagactttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaaggctgaatacaacaggtgtagtagacctcacagtgaaatgcttagttacgagCCCTTTCCAAAACAATCCAGAATAAGAAAGTTTAAAAAGGAAATAGtatcacaataaaataacaacaacaataatgagactatatacaaacagtaccagtaccaagtcaatgttgCAGGGGTATGAGggagttgaggtaattgaggcaatatatacatgtactgtaggtaggggttaagggactaggtaatatatacatgtactgtaggtaggggtaaagggactaggtaatatatacatgtactgtaggtaggggtaaagggactaggtaatatatacatgtactgtaggtaggggtaaagggactaggtaatatatacatgtactgtaggtaggggtgaagggactaggtaatatatacatgtactgtaggtaggggtgaagggactaggtaatatatacatgtactgtaggtaggggtaaagggactaggtaatatatacatgtactgtaggtaggggtgaagggaCTAGGCAAACAGGAGAAATAATACACAGAataacagcagcgtatgtgaaagACTGTGAAAGTgtgacttacacacacacacacgcacacgcacacacacacacacacacacacacacacacacacacacacacttgagtcATACAGTCAAGCATGATGAAGTGTGGAGAAAGcctaggagagag
>TU14845
gaatacaacaggtgtagtagacgttacagtgaaatgctgaatacaacagatgtagtagaccttacagtgaaatgctgaatacaacagatgtagtagaccttacagtgaaatgctgaatacaacagatgtagtagaccttacagtgaaatgctgaatacaacagatgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacattactgtgaaatgctgaatacaacaggtgtagtagacattactgtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacattacagtgaaatgctgtatacgacaggtgtagtagactttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagactttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaaggctgaatacaacaggtgtagtagacctcacagtgaaatgcttagttacgagCCCTTTCCAAAACAATCCAGAATAAGAAAGTTTAAAAAGGAAATAGtatcacaataaaataacaacaacaataatgagactatatacaaacagtaccagtaccaagtcaatgttgCAGGGGTATGAGggagttgaggtaattgaggcaatatatacatgtactgtaggtaggggttaagggactaggtaatatatacatgtactgtaggtaggggtgaagggactaggtaatatatacatgtactgtaggtaggggtaaagggactaggtaatatatacatgtactgtaggtaggggtaaagggactaggtaatatatacatgtactgtaggtaggggtgaagggactaggtaatatatacatgtactgtaggtaggggtaaagggactaggtaatatatacatgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14844 False 2025 lncRNA 0.50 6 13795935 13799297
TU14845 True 1101 lncRNA 0.45 4 13796270 13798641

Neighbor

gene id symbol gene type direction distance location
tm2d1 LOC106574044 coding upstream 42260 13734763 ~ 13753675 (+)
pdzk1ip1 LOC106574040 coding upstream 354407 13436016 ~ 13441528 (+)
LOC110485322 LOC106574039 coding upstream 364818 13425566 ~ 13431117 (+)
LOC110485223 LOC106574083 coding upstream 384645 13409282 ~ 13411290 (+)
LOC110538561 LOC106574035 coding upstream 500483 13238613 ~ 13295452 (+)
LOC110508285 LOC106574085 coding downstream 341199 14140496 ~ 14144946 (+)
LOC110485648 LOC106574045 coding downstream 363088 14162385 ~ 14171600 (+)
LOC110485979 LOC106574047 coding downstream 373222 14172519 ~ 14185257 (+)
LOC110486057 NA coding downstream 393170 14192456 ~ 14214939 (+)
axdnd1 axdnd1 coding downstream 420870 14220167 ~ 14244412 (+)
G12499 NA non-coding upstream 7073 13779607 ~ 13788862 (+)
G12497 NA non-coding upstream 20064 13775533 ~ 13775871 (+)
G12411 NA non-coding upstream 126907 13617745 ~ 13669028 (+)
G12410 NA non-coding upstream 129064 13617059 ~ 13666871 (+)
G12412 NA non-coding upstream 130699 13629753 ~ 13665236 (+)
G12509 NA non-coding downstream 12639 13811936 ~ 13813273 (+)
G12535 NA non-coding downstream 54194 13853491 ~ 13853770 (+)
G12573 NA non-coding downstream 134803 13934100 ~ 13994776 (+)
G12580 NA non-coding downstream 148032 13947329 ~ 13952338 (+)
G12587 NA non-coding downstream 161158 13960455 ~ 13960886 (+)
LOC110523899 LOC106574090 other upstream 2281553 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3634649 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3804393 9980527 ~ 9991542 (+)
G13380 NA other downstream 880053 14679350 ~ 14679578 (+)
G13381 NA other downstream 880401 14679698 ~ 14680027 (+)
G13391 NA other downstream 900879 14700176 ~ 14700730 (+)
G13434 NA other downstream 1012474 14811771 ~ 14812624 (+)

Expression


Co-expression Network