G12680


Basic Information

Item Value
gene id G12680
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14099008 ~ 14099291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU15054
ACACATGCACGCGAACTTGACATTTTAAATGCACTAATGTAACTAACGTATACTCACCCCATtctgtacaaatgtgcgcaaccacgacattcaaacgaggctacaaagaaaactaatgggactgtagcaactgtgttgacttcaacatcgggggtgtgaactaggtttctgttaaagcgttgatcgacatggtaatggctctatagtattggagaaaagttgaaaaaactgaccctccgttacatcttgacgtgtcatgtcgtaacgtacagcacgcataaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15054 True 284 lncRNA 0.44 1 14099008 14099291

Neighbor

gene id symbol gene type direction distance location
tm2d1 LOC106574044 coding upstream 345333 13734763 ~ 13753675 (+)
pdzk1ip1 LOC106574040 coding upstream 657480 13436016 ~ 13441528 (+)
LOC110485322 LOC106574039 coding upstream 667891 13425566 ~ 13431117 (+)
LOC110485223 LOC106574083 coding upstream 687718 13409282 ~ 13411290 (+)
LOC110538561 LOC106574035 coding upstream 803556 13238613 ~ 13295452 (+)
LOC110508285 LOC106574085 coding downstream 41205 14140496 ~ 14144946 (+)
LOC110485648 LOC106574045 coding downstream 63094 14162385 ~ 14171600 (+)
LOC110485979 LOC106574047 coding downstream 73228 14172519 ~ 14185257 (+)
LOC110486057 NA coding downstream 93176 14192456 ~ 14214939 (+)
axdnd1 axdnd1 coding downstream 120876 14220167 ~ 14244412 (+)
G12675 NA non-coding upstream 7657 14090734 ~ 14091351 (+)
G12670 NA non-coding upstream 15032 14083471 ~ 14083976 (+)
G12663 NA non-coding upstream 30322 14068471 ~ 14068686 (+)
G12662 NA non-coding upstream 33142 14065600 ~ 14065866 (+)
G12655 NA non-coding upstream 46559 14052163 ~ 14052449 (+)
G12692 NA non-coding downstream 27039 14126330 ~ 14190815 (+)
G13121 NA non-coding downstream 322114 14421405 ~ 14421630 (+)
G13334 NA non-coding downstream 469808 14569099 ~ 14571242 (+)
G13359 NA non-coding downstream 534672 14633963 ~ 14635553 (+)
G13363 NA non-coding downstream 543072 14642363 ~ 14642610 (+)
G12410 NA other upstream 467118 13617059 ~ 13666871 (+)
LOC110523899 LOC106574090 other upstream 2584626 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3937722 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 4107466 9980527 ~ 9991542 (+)
G13380 NA other downstream 580059 14679350 ~ 14679578 (+)
G13381 NA other downstream 580407 14679698 ~ 14680027 (+)
G13391 NA other downstream 600885 14700176 ~ 14700730 (+)
G13434 NA other downstream 712480 14811771 ~ 14812624 (+)

Expression


Co-expression Network