G12692


Basic Information

Item Value
gene id G12692
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14126330 ~ 14190815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU15066
atactttgtagcgccaccttgttctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaaattgtttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccatagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctctatcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgc

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15066 True 452 lncRNA 0.48 2 14126330 14190815

Neighbor

gene id symbol gene type direction distance location
tm2d1 LOC106574044 coding upstream 372655 13734763 ~ 13753675 (+)
pdzk1ip1 LOC106574040 coding upstream 684802 13436016 ~ 13441528 (+)
LOC110485322 LOC106574039 coding upstream 695213 13425566 ~ 13431117 (+)
LOC110485223 LOC106574083 coding upstream 715040 13409282 ~ 13411290 (+)
LOC110538561 LOC106574035 coding upstream 830878 13238613 ~ 13295452 (+)
LOC110486057 NA coding downstream 1652 14192456 ~ 14214939 (+)
axdnd1 axdnd1 coding downstream 29352 14220167 ~ 14244412 (+)
tdrd5 LOC106574052 coding downstream 60574 14251389 ~ 14304106 (+)
LOC110486340 fam163a coding downstream 127721 14318536 ~ 14349627 (+)
LOC110486505 LOC106574055 coding downstream 159730 14350545 ~ 14495848 (+)
G12680 NA non-coding upstream 27039 14099008 ~ 14099291 (+)
G12675 NA non-coding upstream 34979 14090734 ~ 14091351 (+)
G12670 NA non-coding upstream 42354 14083471 ~ 14083976 (+)
G12663 NA non-coding upstream 57644 14068471 ~ 14068686 (+)
G12662 NA non-coding upstream 60464 14065600 ~ 14065866 (+)
G13121 NA non-coding downstream 230590 14421405 ~ 14421630 (+)
G13334 NA non-coding downstream 378284 14569099 ~ 14571242 (+)
G13359 NA non-coding downstream 443148 14633963 ~ 14635553 (+)
G13363 NA non-coding downstream 451548 14642363 ~ 14642610 (+)
G13364 NA non-coding downstream 451915 14642730 ~ 14642996 (+)
G12410 NA other upstream 494440 13617059 ~ 13666871 (+)
LOC110523899 LOC106574090 other upstream 2611948 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3965044 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 4134788 9980527 ~ 9991542 (+)
G13380 NA other downstream 488535 14679350 ~ 14679578 (+)
G13381 NA other downstream 488883 14679698 ~ 14680027 (+)
G13391 NA other downstream 509361 14700176 ~ 14700730 (+)
G13434 NA other downstream 620956 14811771 ~ 14812624 (+)

Expression


Co-expression Network