G13908


Basic Information

Item Value
gene id G13908
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15340394 ~ 15413245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU16448
ggcaaataaaaCCACCCGGCAAATTCGGGCCTGTGAGGTGCCAGTTGGGGAACTCTGAAGTATACTGATCTGATATCTCCTGTATAGACCTTTAACCTGTCATAGAAGCTGTAATGGCATTATGGTTGAGTAACTGAAATACTTAAATATGTATTACTTTCCATAGAACGGAGGACAGAGTTCAAACGTAACAAGCTATACAGCTAAAGGAGAAAAGTCCTTGAGATCTCAAAAAGGTGGAAACGAATAAAGTGGAAGGATCTTAAAGGGGAAGTTTGGAGTATCCCAGGCAGCTCTTACCTTAGAGCTCCTGTTGTGGCTGACCTGGGCTGGCGCCGGCCCTTTAAGGCACGCAATTTATCTCCTTGGGTCATGCATAGGCCATTCTCCCCAATGTAGTCGTTCTGTGGAGAGAACACATGATCACATAAGATAATGTGGCTAAGTATCTACGGTAGATTggattaacttcttgacgctacccatccctttagcgggataattgtcatcaacaaccgctgaattgcatagcgccacattcaaataatattactaaacatatttatattcatgaaatcacaagtgcaatatagcaaaacacaacttagcattttgttaatccacctgtggtgtcagattttgaaaatatgctttacagcgaaagcaatccaagcgtttgtgtaagtttatcgatcactagacaaaacattatgaacacctagcatcaaagtagcgtggtcacgaaaatcagaaaagcaataaaattaattgcttacctttgatgatcttcggatgttttcactcacgagactcccagttacacaataaatgttccttatTTTTTATATCctaaatacctccgtttgtttggcgcgttatgttcagaaatccacaggctcgagcggtcacgacaactcagacgaaaattccaaatagtatccgtaatgtccacagaaacatgtcaacgttttttataatcaatcctcaggttgtttttaaaatatataatcgataatatatcaaccggcactgtctctttttcagtaggagagggagagtcagtggcTGCCCCACTATGTTACacaagcaaaactcatgcgaacacccagctatccaccgacgcgatgttatctttctcgctcatttttcaaaataaaagcctgaaactatgtctaaagactgttgacaccttgaggaagcatTAGGAAAattaatctggttgatatccctttaaatggagcgaagccaggctatggaacatggagctttcaaaatagaagccacttcctggtttgattttcctcaggtttcgcctgcaatatcagttctgttatactcacagacaatattttgacagttttggaaacattagagtgttttctatcctaatctgtcaattatatgcatattctagcatatgggcctgagaaataggccgtttacattgggaacgttatttttccaaacataaaaatagtgccccctagctgaaaGAGGTTAACAGACCAGAATACGGTACTGTTTTGTGTATAAGAACAATTGTCTATAAAAATAAATCCTCTagtccagggtttcccaaactaaGTCCATGGGATCCCAAggagtgcacgttttggtttttgcccaagcactacacagctgattcaaacaatcaactaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16448 True 1660 lncRNA 0.42 2 15340394 15413245

Neighbor

gene id symbol gene type direction distance location
LOC110529632 dph5 coding upstream 99228 15192649 ~ 15241166 (+)
LOC110488261 antithrombin coding upstream 168979 15163316 ~ 15171415 (+)
LOC110488062 LOC106613585 coding upstream 180922 15130526 ~ 15159472 (+)
LOC110529430 LOC106574078 coding upstream 214392 15117850 ~ 15126002 (+)
LOC110487930 LOC106574072 coding upstream 260090 15075184 ~ 15080304 (+)
LOC110489303 dbt coding downstream 11877 15425122 ~ 15432764 (+)
LOC118966767 NA coding downstream 18264 15431509 ~ 15431641 (+)
lrrc39 lrrc39 coding downstream 19844 15433089 ~ 15437025 (+)
sass6 sass6 coding downstream 34213 15447458 ~ 15468011 (+)
LOC110489630 LOC106573979 coding downstream 95517 15508762 ~ 15521789 (+)
G13890 NA non-coding upstream 16426 15317312 ~ 15323968 (+)
G13865 NA non-coding upstream 57531 15282659 ~ 15282863 (+)
G13863 NA non-coding upstream 58974 15281162 ~ 15281420 (+)
G13856 slc30a7 non-coding upstream 67473 15269170 ~ 15272921 (+)
G13835 NA non-coding upstream 98152 15241591 ~ 15242242 (+)
G13956 NA non-coding downstream 8346 15421591 ~ 15421805 (+)
G14359 NA non-coding downstream 115085 15528330 ~ 15528643 (+)
G14365 NA non-coding downstream 117756 15531001 ~ 15531361 (+)
G14415 NA non-coding downstream 197828 15611073 ~ 15611634 (+)
G13639 NA other upstream 378391 14961554 ~ 14962003 (+)
G13434 NA other upstream 527770 14811771 ~ 14812624 (+)
G13391 NA other upstream 639664 14700176 ~ 14700730 (+)
G13381 NA other upstream 660367 14679698 ~ 14680027 (+)
G13380 NA other upstream 660816 14679350 ~ 14679578 (+)
LOC110490510 LOC106573976 other downstream 281796 15694810 ~ 15716774 (+)
LOC118941201 NA other downstream 1165841 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1503254 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1549812 16962997 ~ 16967790 (+)

Expression


Co-expression Network