XLOC_020227 (si:dkeyp-87e7.4)


Basic Information

Item Value
gene id XLOC_020227
gene name si:dkeyp-87e7.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10232527 ~ 10262441 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040215
AAACTCTCGCCCTCTGAAGCTCTGAGAGCCATTTTTGTTTCATGGCAGGGAGCTCGTCGGCTCTCATTTCAATGCTCTCAGAAGGGACTCGGTAAAAGACACCTGAAGTCCTTATGCATACCAGCTGTGAAGGTGCACCATGAATTGTGAAGATCAGGGCATGGGGAGGGTAGTCCATTCCTGGGCCAGATTTGCCCCAGCTGGACACACTGCCCTTGAAGAGGCCCTAAGGGTCTTTAACCCCATGTCCAAGGACCTGACGGACACAGAGAGACAAATGGCGTCCTTTCTTCAAGAGCTAAGGAAAGAGGGAGCGAAACCTGTGATCCTGCGGAGCAAAGATGTGTACGGATACACATCTTGCACTACGGAGCCAATTTCCTCCAGGATTAGCACTACCAAGGTTCAGAGAGTGCAGAAACCTTGCAAGAAGCGTGGAGGACGCAAAGGTTTGGGCAAGTCCAAGGATGTAAATTACTCGATGCTTACTCGAGCAGAAAAGGACATTCTCCAAAACCAACCCAAGATCCTGCTTACCAATCTTTCGGTGGACCGCCTTAGGCGGAACACCGCATCGACAAGGCTAGATAAACATTCTGTTCAAGCACAGCAGTGCCTCAAGCTAACAAACATAAAGGGGTTGACTGGAGGCCACACTGCGAGGTTGCAGATTCACTTTGGTGCTGATTCACAAAGCAGTTTTGCTCTGGGACGACCACCGGATCTCTCCGGGATTCCACACTCTCCCACAGAAAACGGCAGTCAGATATCAAACGTAGTTGCCTTGGACAACAAACGAGTTTTGTCATGTCCGTTCAAAGTAGAAGATGCCCTCATTGGAGACTCTGCCCCAGTGGTCTGCCAAAATGGGTTCGGTCTTAAAGATGGtagcatttataaaaaaatccaAGCTGTGTCAGGTAAACCCGATGTGATGGCCAGTGGTCTGGACAATGGTTCAGTGAGGAGACTCCATTTCCCAAGCTTCAACTGGTCCCAGTCGGCACTCACCAACGGCCAAGATGTTTCTAGACTGAATGACAATGGTCTCGAGTGCAAGGTAATAAAAGTAGATGATTCAGTCACAGATGAGGAGTTGAGGAGGAAGGCACAGAAAATCTTGCAAGTGAACTTGTCGCCTGTGATACAGATTCATCCCCTTGTTGACTCTGTATAGACTGTTTCTGGGGATTCTGTTTTCGTTttctcttaagtttttttttgtttgggagAGATTTTTGGAAACAAACTTAGGTTAACTCTGGATGGGAGCGTTGCAGTTACCTCCAAATTTTGCATTATCGTCAAGTAGTTACTGACATCATAATCCAAAGATGGGATGCTCTTTTGTTCCTGCTCTCACAGTATTTTGTTTCCCCAACACATCCCAACctacctttttattttataagttgTGTCTTTTTATCTAACTTCTGAAGGATTGGACTGATGAACAAACCCTTATTTATGACTATGCAGTTCCCGGGATGCTCCTTTTGTTGGAATTCTATGGGCATGGACTGCTGTCTTACTGGATCATGGGAACAGACTGAATTTGTAGAGTGATTTATTACATGCTACTGCTTGAAAAGACAACGATAGCCTAACCTAAGTTGGTCTTTATGGTTTTTCTACGTCCTTGGATCCTGTTGATGTCAACGTCGCCCAAGTTTTTAGACATCATCAGTTTTGTAATATGTTAGTCTGCCGGCATAGACTGCATATGATATTTTTGTTTAGATTCTAACATGTTCAGATTGGGGgcactttttttttgcatattaatttaatttcaggGCAAAAATAAATGGCCTTATACTTTAAGAGTGAAAAATAACTGAATCTTTGTACTTTTCCTCATCTCAATGTACTTGTTTCTGCACTCCGCTTCTCATTAATTCCTCTGTTTCTTTGAATGTGCCAACCCCGGTATTTGTTTCTTTAAAGTTTTGTTGGTGCCATGACCACAAGTCTTGCAAGAGTTCTCGTCATCCCGTCAAGCAGTGGACCTGTTTGTCCATTGGTTGAACGTACCTCAGACACTTGAATGGGAAAATGCTGTTGTCATTCATCCTGCAGTTAATTATGTATATTGTTCATTCCATACATCCAGGAGTTGATGGGTCATGTTTGATCATTTGAGGCCATCTTGGATTGTTTAACCTGAATCTGAATATGATCTCGATCCAGTTCTGAAGGTAGTATCAAATTgaaatgcattctttacatctTCACAATATCAAGTTTCTCTCGTCAGGATTAATTTGTTGAGGATGTTCATGATTCATGTGCATTGAGCGGTCTTTCTAGGGCACGACAGAATGAATATTTGGAGGAAGAGATCTGTGAGAATTAAGTTCGCATTTGAAATTCATAAGGCCTGTGGttcttttgtttcgttttttcaGGCTAAAGTAGATGATGGCAGTGCAGCAGTTAATCGGTGCCACGAGGCAATTGTTAAACGAAATATTGTTAGAAATTTACGTTTTAAATCCTGTTAAAAGTCTTTCATCCACCCTCAAACGTCAAGcagattttcttttccttttgaaTCATTCTTTATTTTCACCCCATTGAATCTGTGACACTCAAAAGCTGTAAATGTCAGTGTTGTATCTTTAGTTACTGTTATCAAGTTGTGAATTAAAATATGTTTGAGAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6208 Orthologous to human CCDC71 (coiled-coil domain containing 71).

Ensembl:

ensembl_id ENSDARG00000071570

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040215 True 2664 mRNA 0.42 2 10232527 10262441

Neighbor

gene id symbol gene type direction distance location
XLOC_020226 NA coding upstream 9867 10214994 ~ 10222660 (+)
XLOC_020225 pdhb coding upstream 20025 10201826 ~ 10212502 (+)
XLOC_020224 pxk coding upstream 33513 10166407 ~ 10199014 (+)
XLOC_020223 NA coding upstream 67662 10158463 ~ 10164865 (+)
XLOC_020222 tbc1d20 coding upstream 91058 10129788 ~ 10141469 (+)
XLOC_020228 NA coding downstream 37962 10300403 ~ 10354336 (+)
XLOC_020229 cenpp coding downstream 178550 10440991 ~ 10514343 (+)
XLOC_020230 atrip coding downstream 280888 10543329 ~ 10559760 (+)
XLOC_020231 rad54l2 coding downstream 344132 10606573 ~ 10641287 (+)
XLOC_020232 rassf1 coding downstream 382647 10645088 ~ 10658520 (+)
XLOC_020221 NA non-coding upstream 135300 10073420 ~ 10097227 (+)
XLOC_020219 NA non-coding upstream 183294 10018900 ~ 10049233 (+)
XLOC_020216 NA non-coding upstream 241033 9989905 ~ 9991494 (+)
XLOC_020240 BX666064.1 non-coding downstream 820335 11082776 ~ 11085979 (+)
XLOC_020241 NA non-coding downstream 828187 11090628 ~ 11098487 (+)
XLOC_020242 NA non-coding downstream 840550 11102991 ~ 11104983 (+)
XLOC_020243 NA non-coding downstream 843950 11106391 ~ 11107992 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_08064681_08066997 NA coding CI01000030 null 8064234 ~ 8067042 (-)