XLOC_020230 (atrip)


Basic Information

Item Value
gene id XLOC_020230
gene name atrip
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10543329 ~ 10559760 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040219
GCTTGAATGAATACCGAACCTTCAGAAATGCCTCCAACTTTTCCTCTTTTcggttatttgtttgtttggtcaacTACTTTTATGTAAACATTTCAGAATTGCACTTTATCTGGAGTGTTTACTTTTGGTTTGTCATGTCGGTGATTTGACGGGCAGTTGCAGGTTATGCAGGAATCTGAGGAGCGTAAATCAAGCAGGAGCTCGTTGACATGGACTTTCCCCCGAGCAAGAGACTGAAGGGCCCTCAGGTGAAGACTGGACCCGACCCGTTTGACGATGACATTGATTTCACCCAGGATGATCTGGAGCAGATTGATATTATTGCGTCTCAGGCCATCAGCGCAGACGTCCAGAACAGCGGCTCTAAGAGATCTTTCGACGCTGTGCTCGCTTGCGCTGATGAACCGAGCAAAGCTCCAGTGAGGTCCGGGCGGAAAACATTCGCCCTTGGAGATGCCTGCAGCAGCAGCACTTACAACAACACACACGCTCAAAGGAAAGAGCCTTCTGCAGATGGTCCTTCCAGTAAAGATGGGGATGATCTCTATTACAAACAATTAGAGGAGCAGCAAGCAGAGCTGAAGAAAAAGCTgaaggaggtggaggaggagatcTTGATGAAGAACGGGGAGATTCGAGTGCTGCGGGACTCTCTGAAACAGGCTCATCAGGAGCGCGAGCAGCAGCGGCAGGCGCAGATCATCCTGGAGAAGGAGAAAACTCAGGCTCAGAGCGACCGAGAGAAGGAGCTctccaggaagGTGCAGTCGCTGCAGTCGGAGCTGCACTTTAAGGAGGCTGAGATGAACGAGATGAGAGGGAAACTGCAAAGCGTGGAGCGTGGAGGAAAGCAGAGCGGCACACCTGCACGACAAGCTGTTAAGTCTCCTTTAAGTCGAACGTTCATGACGAAGGAAAACTTCTCCGCCGAAATCTCAAAGAGAACGTCTCCTGTCAAACCAGGCCCTTCATCAGACAatgcagcaCTGTCCAGATGTTTACTCCCAGAAGAGCAGCGATCGCAGCAATGCATCGCCTCTGATCTTCAAAAGGAAGGATGTGTGTTACTAAAGCTGCTCCTCCAGCAGCCTCTGGATCCCAGTGTTCTGGGTCTCTGTCATCTGCTGTCCATCAGTCCTGACGCTCTGCCCAATATGCTGACACAACACGGATACATCAGTCCtGGATCATTGTCGACCTCCAGCTCGTCCTCCACAGACCTCCGCTCATTTCCTCGTTCTCCGTCTCAGTTCCACCACCTCCAGAGTCTGGCCATGTCCGCTCTCACAGCACTCTCTCTCCATGAGCCTTCCACTGTCTCTCGCCCCTCATCCTGCCCATCAGCAGTGCACTTCCTCCCCCTGCTTTCCTTCCACATCAGCACCTACTGTCAGTCTCTAGAGGTCTTCGACTCCTCCACCAAATCCTCTCTCCACAGCGGCTCTCTGTCCGGCTCTTCAGACTCCAGCCTGAGCTCCGTCCTGGAGGAGTCTCTGAGCGGACAGGAGGAGTTGGCTCTGGCGGCCCTCAGAGCGCTTCAGCACATCGTCTGCTACAGTAAAGAGGCTCTGGAGGATGTGATTCGGATGCAGACTCCTAAAAACATGCTTGGGGAAATTCAAAATCAGATGCCGGTCCTGAGGAGGCTTTTACAGCTTGCAGATCCGGCGTTCAGTACCGCCGCGGGACACCGGGAGGCGCTAGTGAGCTGCAGTTGGAGGATTCTCAGTGTGCTGGCAGAGAGAGCAGAGGATAACCTGATCTCCAGGCTCCAGGTGGTGATGTCCAGTCCAGTGCTGTCTAAATGCCTGACTCTGGAGACCACCTACAGTATCGTCCATCTGTGTGTGAGATTTCTGTCGTTTATCATCTGTAATGACGAGATGGCCTCTAAGCTCTGCTTGCATGACTATCCGTGTCCTTTTCTTAAAATATTCCAGTACGTCACATCCAGACCGGATAAATCCTCTACTGAGGACGCGTGGAGTCGCTTGGAGCTTGTGGTCATCCGGTTATTGACTAAGCTGTTCACACAGAGGGCAGGAACATGGGCGGCTCTTTGCGAATCATCATGCCAGTGTGTTAATGAGGTGGTGCGGACGGTCGTTGTAGTTTTACACCGACAGTGGCTGAAAACGAAATGCAGAGGAGGTCAAACGGTGGGTACACAGATCTGGTCCAGTCCTGGATTGCAAGTACTGAGAGAAGCACTGATGTTACTGCACTGGCTGCTGTTGAAGGATTCAGCATTTTCCGAACACTGTCTGGACGTCTTACACATGTACGATCAGGTCATTCCCGCCATCAGGGACACTTTCCGTCTGCTCCCAGATCTGTCCGAGAGCGAAGAACTGGCTCTGGAGGAGATCTGCAGGTCTGAAACGGAGTATGTTGAGGACATGGATGTGGAAACAGGGTCATAACAATCAAATATAAAGTCAAATTTTGTAACAAACGATGAAAGTTGGTAGAAGCAGTCTGATTTTTTGTCTCATGTCCTCATTTTTAAGACTACAGAACATTGATGATTggaaattaaagaattaattgtA
>TCONS_00040220
AGTACCGCCGCGGGACACCGGGAGGCGCTAGTGAGCTGCAGTTGGAGGATTCTCAGTGTGCTGGCAGAGAGAGCAGAGGATAACCTGATCTCCAGGCTCCAGGTGGTGATGTCCAGTCCAGTGCTGTCTAAATGCCTGACTCTGGAGACCACCTACAGTATCGTCCATCTGTGTGTGAGATTTCTGTCGTTTATCATCTGTAATGACGAGATGGCCTCTAAGCTCTGCTTGCATGACTATCCGTGTCCTTTTCTTAAAATATTCCAGTACGTCACATCCAGACCGGATAAATCCTCTACTGAGGACGCGTGGAGTCGCTTGGAGCTTGTGATTCCTCTGTCAACAGGTCATCCGGTTATTGACTAAGCTGTTCACACAGAGGGCAGGAACATGGGCGGCTCTTTGCGAATCATCATGCCAGTGTGTTAATGAGGTGGTGCGGACGGTCGTTGTAGTTTTACACCGACAGTGGCTGAAAACGAAATGCAGAGGAGGTCAAACGGTGGGTACACAGATCTGGTCCAGTCCTGGATTGCAAGT

Function

symbol description
atrip Predicted to be involved in DNA damage checkpoint signaling and DNA repair. Orthologous to human ATRIP (ATR interacting protein).

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-050208-331 Predicted to be involved in DNA damage checkpoint signaling and DNA repair. Orthologous to human ATRIP (ATR interacting protein).

Ensembl:

ensembl_id ENSDARG00000063076

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040219 False 2552 mRNA 0.51 14 10543329 10559760
TCONS_00040220 True 540 processed_transcript 0.51 5 10553728 10558972

Neighbor

gene id symbol gene type direction distance location
XLOC_020229 cenpp coding upstream 28986 10440991 ~ 10514343 (+)
XLOC_020228 NA coding upstream 188993 10300403 ~ 10354336 (+)
XLOC_020227 si:dkeyp-87e7.4 coding upstream 280888 10232527 ~ 10262441 (+)
XLOC_020226 NA coding upstream 320669 10214994 ~ 10222660 (+)
XLOC_020225 pdhb coding upstream 330827 10201826 ~ 10212502 (+)
XLOC_020231 rad54l2 coding downstream 46813 10606573 ~ 10641287 (+)
XLOC_020232 rassf1 coding downstream 85328 10645088 ~ 10658520 (+)
XLOC_020233 tusc2b coding downstream 100380 10660140 ~ 10663935 (+)
XLOC_020234 hyal2b coding downstream 113391 10673151 ~ 10692122 (+)
XLOC_020235 abhd14a coding downstream 138789 10698549 ~ 10706873 (+)
XLOC_020223 NA non-coding upstream 378464 10158463 ~ 10164865 (+)
XLOC_020221 NA non-coding upstream 446102 10073420 ~ 10097227 (+)
XLOC_020219 NA non-coding upstream 494096 10018900 ~ 10049233 (+)
XLOC_020240 BX666064.1 non-coding downstream 523016 11082776 ~ 11085979 (+)
XLOC_020241 NA non-coding downstream 530868 11090628 ~ 11098487 (+)
XLOC_020242 NA non-coding downstream 543231 11102991 ~ 11104983 (+)
XLOC_020243 NA non-coding downstream 546631 11106391 ~ 11107992 (+)
XLOC_020244 NA non-coding downstream 554762 11114522 ~ 11119169 (+)

Expression


Co-expression Network