XLOC_020416


Basic Information

Item Value
gene id XLOC_020416
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21848286 ~ 21852131 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042141
AAGGCTATGAAAGTCATTTTCATGTATGAATGAGGTTCAGGCAACAGTGGTTGAAATGAAACATACAAAAAGAGAAATATGtctaaaatactgtaaatgaacaataattaagCCCCTTTGTCAGCAGGGTTGCGCGTTAATACGATTTCTTTTCCCGACCCTCTCCACCGAaaacaaacacatgcaattaaaatgtcatttctcTTAAAAACAGCAGTTTGTAATCTTTAATCCTAAATACAGAATAAAATTGTCCTCTTCCTGTTGCGTGTTTACCATAATCACATacttaatgtttatttgtttttaaaaaccgGACCATAAAATACACAagtcctttttttgttttgttttgtttttttaaatgatttccaCAACATTGGCACTTGTAAAGAGTCTGGCTCTACAAATCAAAGGGATTGGCACACTCAATATAGTACATCATTTACATTTggtatgcttaaaaaaaaagaaaaaaaaaagagcaaccaACTGAACAAGAAATACATTACAAAGTAATACAATACTTTGATTTTATACACCACTACACAAAAAAATTATCTTTatcaaaaacaaatgtattatattaaagTGTCCTACATACAAGTGTTCAGGTAATGCATCAACATccgaaaaaaagaaagtaaagataGCTTCATATTGTACGCATCCATCACGTCAAGCCAAAGCGTCATTTCTATTCATTAGTGTCTGCATCTCTCATCTCGAGtaccaggaacaagtttggaggAACAGATAGGTGTCTcgctgttttcttttttaatcgcTCTCTGTTTCACACTAGGTTGTACTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042141 True 815 lncRNA 0.33 2 21848286 21852131

Neighbor

gene id symbol gene type direction distance location
XLOC_020415 NA coding upstream 25059 21822959 ~ 21823227 (+)
XLOC_020414 NA coding upstream 50545 21789096 ~ 21797741 (+)
XLOC_020413 NA coding upstream 60638 21786779 ~ 21787648 (+)
XLOC_020412 NA coding upstream 81447 21669165 ~ 21766839 (+)
XLOC_020411 tle2a coding upstream 180454 21618121 ~ 21667832 (+)
XLOC_020417 BX649295.2 coding downstream 37691 21889822 ~ 21911948 (+)
XLOC_020418 gna15.4 coding downstream 98707 21950838 ~ 21957192 (+)
XLOC_020419 si:ch211-207c7.2 coding downstream 113017 21965148 ~ 21968364 (+)
XLOC_020420 gna15.3 coding downstream 120693 21972824 ~ 21984064 (+)
XLOC_020421 gna15.3 coding downstream 151951 22004082 ~ 22014961 (+)
XLOC_020403 NA non-coding upstream 707167 21134709 ~ 21141119 (+)
XLOC_020427 NA non-coding downstream 626133 22478264 ~ 22629319 (+)
XLOC_020428 NA non-coding downstream 869091 22721222 ~ 22723937 (+)
XLOC_020429 CABZ01039424.1 non-coding downstream 988427 22840558 ~ 22840675 (+)
XLOC_020430 BX936380.1 non-coding downstream 1103601 22955732 ~ 22955849 (+)
XLOC_020431 BX469928.1 non-coding downstream 1243557 23095688 ~ 23095804 (+)

Expression


Co-expression Network