zgc:110410 (LOC106594189)


Basic Information

Item Value
gene id zgc:110410
gene name LOC106594189
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 714730 ~ 722393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934878.1
ACATggtagtgcaccacatagggatCAGGGTGAATAGATGTCTGTTTGGGATGCAGCCCAACTGATTACAGGTAGACTTTGGCCCTGGAGGGACTGTTACAGGAAGAGACAGACCGGAGCGCTGTGGAAGAGGAGGGTAACATGGATCAATCGAAAAGAAGCAGTGAAGTCCAACTCCCACCGCCCTACTCTCAGGACGATGGTCAACAGAACACCTATGGCCAAGAGAACACCTATGGCCAAGAGAACACCTATGGCCAAGAGAACACCTATGGCCAACAGAACTACAGTTCTCCCCACTACGGTCTGAACGTTGGCCCTGGCAACATAGCGGTGGTCTCACCAGCGGGTCAGTATAACGACATGGGTCAGGGTCATCCCGAGGACCAACAACAACAATGGGCTGCTCCACTACCACCTGACTATTCCACCGGGCTGGAGGACACCGGCTGCTTTGATGACAAAGCCATAAGAAGAGGCTTTATAAAGAAGGTGTACCTGACTCTGATGATTCAGCTTCTAGTCACCTTTGGGATCATCTGTGCCTTTCTGTATTGGGAGGCTCTGAGGCTCTGGTCTATGAAGACCTACTGGTTTTCTTCCTGCATGATAGCAGTGGTGATTGTCATCATCATTTCCTTGTCCTGTTGTGCCAATATACGTCGGAAGGTCCCACTCAATTTCCTAGCCTTGGGACTGTTTACCACTGCAGAAGGTCTACTGCTGGGCTCTGTGACTGTGTTCTATGAGGCGGAAGCTGTTATGTGGGCTGTGGGCGCCACAGCACTGGTCTCCCTGGCTCTGAGTGTCTTCGCCATGCAGTCCAGATGGGACTTCACCTTAGCCAGTGGGGGCTTGTGGGTGTTCTGTTGGACACTCATATCCTTTGCATTGTTGTGTGGAATCATGCGATCCCAGTATGTGTACATTGTGTACGCTTGCCTGGGAACCTTGCTATTTTCTTTGtACCTGGTAATGGACACTCAGCTCATACTGGGCGGGAACCACAAATACAGCATTTCACCAGAGGAGTACATCTTTGCTGCTCTCAACCTGTACCTGGACATCATCTCTCTGTTCACCATGCTACTGGCACTCATTGGACTCAGCCGTTAACTTAATACGCTGTTGTCACGTCAGATAGCGCAACAAGCCACCTGCCCTGATGTAGTTGAGGGACGAGCGTGGAGTAGGAAATTAGGATAATGCCTTTTTAAAAatgaaatcaaatgaaatgtattggtcacatacacgtatttagcagatgttattgagggtgtagcgaaatgcttgtgttcctagccccaacagaaatgcttgtgttcctagccccaacagaaatgcttgtgttcctagccccaacagaaatgcttgtgttcctagccccaacagaaatgcttgtgttcctagctccaatataaatgcttgtgttcc
>XM_036934871.1
CCAACTGATTACAGGTAGACTTTGGCCCTGGAGGGACTGTTACAGGAAGAGACAGACCGGAGCGCTGTGGAAGAGGACGTATTACCTGACGAAAATCTTTTAGGAGGGTAACATGGATCAATCGAAAAGAAGCAGTGAAGTCCAACTCCCACCGCCCTACTCTCAGGACGATGGTCAACAGAACACCTATGGCCAAGAGAACACCTATGGCCAAGAGAACACCTATGGCCAAGAGAACACCTATGGCCAACAGAACTACAGTTCTCCCCACTACGGTCTGAACGTTGGCCCTGGCAACATAGCGGTGGTCTCACCAGCGGGTCAGTATAACGACATGGGTCAGGGTCATCCCGAGGACCAACAACAACAATGGGCTGCTCCACTACCACCTGACTATTCCACCGGGCTGGAGGACACCGGCTGCTTTGATGACAAAGCCATAAGAAGAGGCTTTATAAAGAAGGTGTACCTGACTCTGATGATTCAGCTTCTAGTCACCTTTGGGATCATCTGTGCCTTTCTGTATTGGGAGGCTCTGAGGCTCTGGTCTATGAAGACCTACTGGTTTTCTTCCTGCATGATAGCAGTGGTGATTGTCATCATCATTTCCTTGTCCTGTTGTGCCAATATACGTCGGAAGGTCCCACTCAATTTCCTAGCCTTGGGACTGTTTACCACTGCAGAAGGTCTACTGCTGGGCTCTGTGACTGTGTTCTATGAGGCGGAAGCTGTTATGTGGGCTGTGGGCGCCACAGCACTGGTCTCCCTGGCTCTGAGTGTCTTCGCCATGCAGTCCAGATGGGACTTCACCTTAGCCAGTGGGGGCTTGTGGGTGTTCTGTTGGACACTCATATCCTTTGCATTGTTGTGTGGAATCATGCGATCCCAGTATGTGTACATTGTGTACGCTTGCCTGGGAACCTTGCTATTTTCTTTGtACCTGGTAATGGACACTCAGCTCATACTGGGCGGGAACCACAAATACAGCATTTCACCAGAGGAGTACATCTTTGCTGCTCTCAACCTGTACCTGGACATCATCTCTCTGTTCACCATGCTACTGGCACTCATTGGACTCAGCCGTTAACTTAATACGCTGTTGTCACGTCAGATAGCGCAACAAGCCACCTGCCCTGATGTAGTTGAGGGACGAGCGTGGAGTAGGAAATTAGGATAATGCCTTTTTAAAAatgaaatcaaatgaaatgtattggtcacatacacgtatttagcagatgttattgagggtgtagcgaaatgcttgtgttcctagccccaacagaaatgcttgtgttcctagccccaacagaaatgcttgtgttcctagccccaacagaaatgcttgtgttcctagccccaacagaaatgcttgtgttcctagctccaatataaatgcttgtgttcc

Function

NR:

description
protein lifeguard 1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934878.1 False 1434 mRNA 0.49 10 714730 722393
XM_036934871.1 True 1405 mRNA 0.49 10 714787 722393

Neighbor

gene id symbol gene type direction distance location
LOC110512917 csmd3 coding upstream 42536 149182 ~ 672194 (+)
LOC118936272 LOC106596174 coding upstream 696634 13864 ~ 18096 (+)
LOC118937316 LOC106573240 coding downstream 2398 724791 ~ 731551 (+)
cmc1 cc068 coding downstream 138066 860459 ~ 872515 (+)
LOC110506977 LOC106595099 coding downstream 183183 905576 ~ 908576 (+)
LOC118936923 NA coding downstream 246223 968616 ~ 969528 (+)
rbms3 rbms3 coding downstream 301068 1023461 ~ 1231535 (+)
G104102 NA non-coding upstream 12379 699871 ~ 702351 (+)
G104091 NA non-coding upstream 24824 689586 ~ 689906 (+)
G103840 NA non-coding upstream 38355 676014 ~ 676375 (+)
G104072 NA non-coding upstream 71236 640776 ~ 643494 (+)
G104067 NA non-coding upstream 81391 632774 ~ 633339 (+)
G104106 NA non-coding downstream 18569 740962 ~ 741553 (+)
G104111 NA non-coding downstream 24003 746396 ~ 748276 (+)
G104114 NA non-coding downstream 31306 753699 ~ 754328 (+)
G104116 NA non-coding downstream 34393 756786 ~ 757771 (+)
G104092 NA other upstream 13459 690046 ~ 701271 (+)
G103851 NA other upstream 533708 174996 ~ 181022 (+)
G104761 NA other downstream 430668 1153061 ~ 1153749 (+)
tgfbr2b LOC106606173 other downstream 586885 1309202 ~ 1390936 (+)
G105036 NA other downstream 976680 1699073 ~ 1700431 (+)
G105042 NA other downstream 986576 1708969 ~ 1710557 (+)

Expression


Co-expression Network