cmc1 (cc068)


Basic Information

Item Value
gene id cmc1
gene name cc068
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 860459 ~ 872515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934927.1
AGTTGTGGAGAATTGTGGGCATTGTAGTTCGTTCCACAGTTGAGTGACGCACCCGGAAGTAACGTGGTAAAGAAGAGAGGTCACTTTGCTtctgttttgtaatgttttgaTTTAGCAACACTGCTGATAATTATGGAAGCAACCAAAGCAGAGGAGCCTTTCCTGAGGCATGTGGAGACGGATGTACTCATCCCCAAGATGGTGAGGGAGAAAGCCAAGGAGCTCTGTGCTGAAAAGGTTACAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGTTCAAGTGTCGGGATCAGAACGCTGCCCTGAAGGAGTGTCTGACCGTACActacaGAGACTCTGCGTTATTCGAGGAGTGCAAGCAGGAGTACATCAAGGAGAAGCTGGAGTACCAGAGGACAGGGGTGGCGGCTAAGAACCGCTCACAAAAACTACCAACCAGCATGTAGGTTCCAaattgacccctgacccctgaccatGTTGCTTCCAcatgtccaatcctctcagatctacgGGATTGGTTCGGTAGCAGGGGCTAGGGGTCACGGAGGGTGGCAGGGGGAGTGAGGGCTACTCACGGGGCTTTACAGTGTGTGTATTGTACATCCGGTTGGGATGCTCATTGCCCCAACGGGAGGAACTAGATCAACGAAGTGGCAGGAGACAGGAGGTCATCCTAGGCCCTAAGTGACCTGTGTAACGACTACGAGGCAGATTGGCAAGGTGTGTCTAAAGGCCTCCGTTCACCTGTATGTAGGGAAAATAAATCTCTTACAGATACGTGTTCCTCAACAGAGTCTCTCTGGTTGATCTGATCTAACAGCCATGATGAAAAATCACATTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGTCAGGATGAAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCT
>XM_036934910.1
AGTTGTGGAGAATTGTGGGCATTGTAGTTCGTTCCACAGTTGAGTGACGCACCCGGAAGTAACGTGGTAAAGAAGAGAGGTCACTTTGCTtctgttttgtaatgttttgaTTTAGCAACACTGCTGATAATTATGGAAGCAACCAAAGCAGAGGAGCCTTTCCTGAGGCATGTGGAGACGGATGTACTCATCCCCAAGATGGTGAGGGAGAAAGCCAAGGAGCTCTGTGCTGAAAAGGTTACAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGGTAATTTACTGGCTAAATCtgtctccttccatccatctggTTTCAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGTTCAAGTGTCGGGATCAGAACGCTGCCCTGAAGGAGTGTCTGACCGTACActacaGAGACTCTGCGTTATTCGAGGAGTGCAAGCAGGAGTACATCAAGGAGAAGCTGGAGTACCAGAGGACAGGGGTGGCGGCTAAGAACCGCTCACAAAAACTACCAACCAGCATGTAGGTTCCAaattgacccctgacccctgaccatGTTGCTTCCAcatgtccaatcctctcagatctacgGGATTGGTTCGGTAGCAGGGGCTAGGGGTCACGGAGGGTGGCAGGGGGAGTGAGGGCTACTCACGGGGCTTTACAGTGTGTGTATTGTACATCCGGTTGGGATGCTCATTGCCCCAACGGGAGGAACTAGATCAACGAAGTGGCAGGAGACAGGAGGTCATCCTAGGCCCTAAGTGACCTGTGTAACGACTACGAGGCAGATTGGCAAGGTGTGTCTAAAGGCCTCCGTTCACCTGTATGTAGGGAAAATAAATCTCTTACAGATACGTGTTCCTCAACAGAGTCTCTCTGGTTGATCTGATCTAACAGCCATGATGAAAAATCACATTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGTCAGGATGAAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAA
>XR_005034563.1
AGTTGTGGAGAATTGTGGGCATTGTAGTTCGTTCCACAGTTGAGTGACGCACCCGGAAGTAACGTGGTAAAGAAGAGAGGTCACTTTGCTtctgttttgtaatgttttgaTTTAGCAACACTGCTGATAATTATGGAAGCAACCAAAGCAGAGGAGCCTTTCCTGAGGCATGTGGAGACGGATGTACTCATCCCCAAGATGGTGAGGGAGAAAGCCAAGGAGCTCTGTGCTGAAAAGGTTACAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGGTAATTTACTGGCTAAATCtgtctccttccatccatctggTTTCAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGTTCAAGTGTCGGGATCAGAACGCTGCCCTGAAGGAGTGTCTGACCGTACActacaGAGACTCTGCGTTATTCGAGGAGTGCAAGCAGGAGTACATCAAGGAGAAGCTGGAGTACCAGAGGACAGGGGTGGCGGCTAAGAACCGCTCACAAAAACTACCAACCAGCATGTAGGTTCCAaattgacccctgacccctgaccatGTTGCTTCCAcatgtccaatcctctcagatctacgGGATTGGTTCGGTAGCAGGGGCTAGGGGTCACGGAGGGTGGCAGGGGGAGTGAGGGCTACTCACGGGGCTTTACAGTGTGTGTATTGTACATCCGGTTGGGATGCTCATTGCCCCAACGGGAGGAACTAGATCAACGAAGTGGCAGGAGACAGGAGGTCATCCTAGGCCCTAAGTGACCTGTGTAACGACTACGAGGCAGATTGGCAAGGTGTGTCTAAAGGCCTCCGTTCACCTGTATGTAGGGAAAATAAATCTCTTACAGATACGTGTTCCTCAACAGAGTCTCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAAATCACACTGTTCCTCCTATTTCAGAATGATCcaataatgttttgttgttgatgctgtctgtctgctctgcagTTTGTATATTTATGAAGAATTTTTTCTGTCAATGCTTTGGAAACGTTTTCATGTTGAGTTTGTTAGCAACCAATACTGTCCAAAGTGAGATTGATTCCAATGATATAAGACCTGTCCAAAGTCCATGAATAATAGTCAAGGTGTTGACATCCCAACATCCTCCACTCTGAGAATGTTCCGGAAGGTTCATAATTATACACAAGATTGATACTGCATAGAGGCTTTATCCCGTAGTTAGGATTCACCGGTGGGTTGCCGTAACTACTGGTGTGATGACCGGTGAAGCATTATGGGTAGAGttgttgtaaaaaaaaaggtCTGATTTTTAATATAACATTTGACTTGACATTGTGTTAACGTACATATAAATAAAGACAAACAGATCTTCtag
>XM_036934922.1
ACCGACAACGTTTCCATCCCGACCCGGATCTTCGTCGAATCGAAACGTCGTCGGTAAAGCGGTGGATTTGGGAGCTTTAACGGTGTGCGGCGGGGCCTTCTTGTTGTTATCATGAGGAGCCTTTCCTGAGGCATGTGGAGACGGATGTACTCATCCCCAAGATGGTGAGGGAGAAAGCCAAGGAGCTCTGTGCTGAAAAGGTTACAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGGTAATTTACTGGCTAAATCtgtctccttccatccatctggTTTCAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGTTCAAGTGTCGGGATCAGAACGCTGCCCTGAAGGAGTGTCTGACCGTACActacaGAGACTCTGCGTTATTCGAGGAGTGCAAGCAGGAGTACATCAAGGAGAAGCTGGAGTACCAGAGGACAGGGGTGGCGGCTAAGAACCGCTCACAAAAACTACCAACCAGCATGTAGGTTCCAaattgacccctgacccctgaccatGTTGCTTCCAcatgtccaatcctctcagatctacgGGATTGGTTCGGTAGCAGGGGCTAGGGGTCACGGAGGGTGGCAGGGGGAGTGAGGGCTACTCACGGGGCTTTACAGTGTGTGTATTGTACATCCGGTTGGGATGCTCATTGCCCCAACGGGAGGAACTAGATCAACGAAGTGGCAGGAGACAGGAGGTCATCCTAGGCCCTAAGTGACCTGTGTAACGACTACGAGGCAGATTGGCAAGGTGTGTCTAAAGGCCTCCGTTCACCTGTATGTAGGGAAAATAAATCTCTTACAGATACGTGTTCCTCAACAGAGTCTCTCTGGTTGATCTGATCTAACAGCCATGATGAAAAATCACATTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGTCAGGATGAAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAAC
>XM_036934929.1
ACGGTGTGCGGCGGGGCCTTCTTGTTGTTATCATGAGGAGCCTTTCCTGAGGCATGTGGAGACGGATGTACTCATCCCCAAGATGGTGAGGGAGAAAGCCAAGGAGCTCTGTGCTGAAAAGGTTACAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGTTCAAGTGTCGGGATCAGAACGCTGCCCTGAAGGAGTGTCTGACCGTACActacaGAGACTCTGCGTTATTCGAGGAGTGCAAGCAGGAGTACATCAAGGAGAAGCTGGAGTACCAGAGGACAGGGGTGGCGGCTAAGAACCGCTCACAAAAACTACCAACCAGCATGTAGGTTCCAaattgacccctgacccctgaccatGTTGCTTCCAcatgtccaatcctctcagatctacgGGATTGGTTCGGTAGCAGGGGCTAGGGGTCACGGAGGGTGGCAGGGGGAGTGAGGGCTACTCACGGGGCTTTACAGTGTGTGTATTGTACATCCGGTTGGGATGCTCATTGCCCCAACGGGAGGAACTAGATCAACGAAGTGGCAGGAGACAGGAGGTCATCCTAGGCCCTAAGTGACCTGTGTAACGACTACGAGGCAGATTGGCAAGGTGTGTCTAAAGGCCTCCGTTCACCTGTATGTAGGGAAAATAAATCTCTTACAGATACGTGTTCCTCAACAGAGTCTCTCTGGTTGATCTGATCTAACAGCCATGATGAAAAATCACATTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGTCAGGATGAAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCT
>TU116937
CGCACCCGGAAGTAACGTGGTAAAGAAGAGAGGTCACTTTGCTtctgttttgtaatgttttgaTTTAGCAACACTGCTGATAATTATGGAAGCAACCAAAGCAGAGGAGCCTTTCCTGAGGCATGTGGAGACGGATGTACTCATCCCCAAGATGGTGAGGGAGAAAGCCAAGGAGCTCTGTGCTGAAAAGGTTACAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGTTCAAGTGTCGGGATCAGAACGCTGCCCTGAAGGAGTGTCTGACCGTACActacaGAGACTCTGCGTTATTCGAGGAGTGCAAGCAGGAGTACATCAAGGAGAAGCTGGAGTACCAGAGGACAGGGGTGGCGGCTAAGAACCGCTCACAAAAACTACCAACCAGCATGTAGGTTCCAaattgacccctgacccctgaccatGTTGCTTCCAcatgtccaatcctctcagatctacgGGATTGGTTCGGTAGCAGGGGCTAGGGGTCACGGAGGGTGGCAGGGGGAGTGAGGGCTACTCACGGGGCTTTACAGTGTGTGTATTGTACATCCGGTTGGGATGCTCATTGCCCCAACGGGAGGAACTAGATCAACGAAGTGGCAGGAGACAGGAGGTCATCCTAGGCCCTAAGTGACCTGTGTAACGACTACGAGGCAGATTGGCAAGGTGTGTCTAAAGGCCTCCGTTCACCTGTATGTAGGGAAAATAAATCTCTTACAGATACGTGTTCCTCAACAGAGTCTCTCTGGTTGATCTGATCTAACAGCCATGATGAAAAATCACATTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGTCAGGATGAAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAAATCACACTGTTCCTCCTATTTCAGAATGATCcaataatgttttgttgttgatgctgtctgtctgctctgcagTTTGTATATTTATGAAGAATTTTTTCTGTCAATGCTTTGGAAACGTTTTCATGTTGAGTTTGTTAGCAACCAATACTGTCCAAAGTGAGATTGATTCCAATGATATAAGACCTGTCCAAAGTCCATGAATAATAGTCAAGGTGTTGACATCCCAACATCCTCCACTCTGAGAATGTTCCGGAAGGTTCATAATTATACACAAGATTGATACTGCATAGAGGCTTTATCCCGTAGTTAGGATTCACCGGTGGGTTGCCGTAACTACTGGTGTGATGACCGGTGAAGCATTATGGGTAGAGttgttgtaaaaaaaaaggtCTGATTTTTAATATAACATTTGACTTGACATTGTGTTAACGTACATATAAATAAAGACAAACAGATCTTCtagc
>TU116938
CGCACCCGGAAGTAACGTGGTAAAGAAGAGAGGTCACTTTGCTtctgttttgtaatgttttgaTTTAGCAACACTGCTGATAATTATGGAAGCAACCAAAGCAGAGGAGCCTTTCCTGAGGCATGTGGAGACGGATGTACTCATCCCCAAGATGGTGAGGGAGAAAGCCAAGGAGCTCTGTGCTGAAAAGGTTACAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGTTCAAGTGTCGGGATCAGAACGCTGCCCTGAAGGAGTGTCTGACCGTACActacaGAGACTCTGCGTTATTCGAGGAGTGCAAGCAGGAGTACATCAAGGAGAAGCTGGAGTACCAGAGGACAGGGGTGGCGGCTAAGAACCGCTCACAAAAACTACCAACCAGCATGTAGGTTCCAaattgacccctgacccctgaccatGTTGCTTCCAcatgtccaatcctctcagatctacgGGATTGGTTCGGTAGCAGGGGCTAGGGGTCACGGAGGGTGGCAGGGGGAGTGAGGGCTACTCACGGGGCTTTACAGTGTGTGTATTGTACATCCGGTTGGGATGCTCATTGCCCCAACGGGAGGAACTAGATCAACGAAGTGGCAGGAGACAGGAGGTCATCCTAGGCCCTAAGTGACCTGTGTAACGACTACGAGGCAGATTGGCAAGGTGTGTCTAAAGGCCTCCGTTCACCTGTATGTAGGGAAAATAAATCTCTTACAGATACGTGTTCCTCAACAGAGTCTCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAAATCACACTGTTCCTCCTATTTCAGAATGATCcaataatgttttgttgttgatgctgtctgtctgctctgcagTTTGTATATTTATGAAGAATTTTTTCTGTCAATGCTTTGGAAACGTTTTCATGTTGAGTTTGTTAGCAACCAATACTGTCCAAAGTGAGATTGATTCCAATGATATAAGACCTGTCCAAAGTCCATGAATAATAGTCAAGGTGTTGACATCCCAACATCCTCCACTCTGAGAATGTTCCGGAAGGTTCATAATTATACACAAGATTGATACTGCATAGAGGCTTTATCCCGTAGTTAGGATTCACCGGTGGGTTGCCGTAACTACTGGTGTGATGACCGGTGAAGCATTATGGGTAGAGttgttgtaaaaaaaaaggtCTGATTTTTAATATAACATTTGACTTGACATTGTGTTAACGTACATATAAATAAAGACAAACAGATCTTCtagc
>TU116939
CGCACCCGGAAGTAACGTGGTAAAGAAGAGAGGTCACTTTGCTtctgttttgtaatgttttgaTTTAGCAACACTGCTGATAATTATGGAAGCAACCAAAGCAGAGGAGCCTTTCCTGAGGCATGTGGAGACGGATGTACTCATCCCCAAGATGGTGAGGGAGAAAGCCAAGGAGCTCTGTGCTGAAAAGGTTACAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGTTCAAGTGTCGGGATCAGAACGCTGCCCTGAAGGAGTGTCTGACCGTACActacaGAGACTCTGCGTTATTCGAGGAGTGCAAGCAGGAGTACATCAAGGAGAAGCTGGAGTACCAGAGGACAGGGGTGGCGGCTAAGAACCGCTCACAAAAACTACCAACCAGCATGTAGGTTCCAaattgacccctgacccctgaccatGTTGCTTCCAcatgtccaatcctctcagatctacgGGATTGGTTCGGTAGCAGGGGCTAGGGGTCACGGAGGGTGGCAGGGGGAGTGAGGGCTACTCACGGGGCTTTACAGTGTGTGTATTGTACATCCGGTTGGGATGCTCATTGCCCCAACGGGAGGAACTAGATCAACGAAGTGGCAGGAGACAGGAGGTCATCCTAGGCCCTAAGTGACCTGTGTAACGACTACGAGGCAGATTGGCAAGGTGTGTCTAAAGGCCTCCGTTCACCTGTATGTAGGGAAAATAAATCTCTTACAGATACGTGTTCCTCAACAGAGTCTCTCTGGTTGATCTGATCTAACAGTCAGGATGAAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAAATCACACTGTTCCTCCTATTTCAGAATGATCcaataatgttttgttgttgatgctgtctgtctgctctgcagTTTGTATATTTATGAAGAATTTTTTCTGTCAATGCTTTGGAAACGTTTTCATGTTGAGTTTGTTAGCAACCAATACTGTCCAAAGTGAGATTGATTCCAATGATATAAGACCTGTCCAAAGTCCATGAATAATAGTCAAGGTGTTGACATCCCAACATCCTCCACTCTGAGAATGTTCCGGAAGGTTCATAATTATACACAAGATTGATACTGCATAGAGGCTTTATCCCGTAGTTAGGATTCACCGGTGGGTTGCCGTAACTACTGGTGTGATGACCGGTGAAGCATTATGGGTAGAGttgttgtaaaaaaaaaggtCTGATTTTTAATATAACATTTGACTTGACATTGTGTTAACGTACATATAAATAAAGACAAACAGATCTTCtagc

Function

NR:

description
COX assembly mitochondrial protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934927.1 False 997 mRNA 0.49 4 860459 871969
XM_036934910.1 False 1091 mRNA 0.49 4 860459 871976
XR_005034563.1 False 1393 mRNA 0.45 5 860459 872514
XM_036934922.1 False 1055 mRNA 0.50 4 860801 871977
XM_036934929.1 False 881 mRNA 0.51 4 860880 871969
TU116937 False 1496 TUCP 0.45 4 860506 872515
TU116938 False 1260 TUCP 0.45 5 860506 872515
TU116939 True 1437 TUCP 0.43 5 860506 872515

Neighbor

gene id symbol gene type direction distance location
LOC118937316 LOC106573240 coding upstream 134484 724791 ~ 731551 (+)
zgc:110410 LOC106594189 coding upstream 138066 714730 ~ 722393 (+)
LOC110512917 csmd3 coding upstream 188265 149182 ~ 672194 (+)
LOC118936272 LOC106596174 coding upstream 842363 13864 ~ 18096 (+)
LOC110506977 LOC106595099 coding downstream 33062 905576 ~ 908576 (+)
LOC118936923 NA coding downstream 96102 968616 ~ 969528 (+)
rbms3 rbms3 coding downstream 150947 1023461 ~ 1231535 (+)
LOC110515032 LOC106606177 coding downstream 349616 1222130 ~ 1224904 (+)
tgfbr2b LOC106606173 coding downstream 436688 1309202 ~ 1390936 (+)
G104128 NA non-coding upstream 80729 778189 ~ 779730 (+)
G104116 NA non-coding upstream 102688 756786 ~ 757771 (+)
G104114 NA non-coding upstream 106131 753699 ~ 754328 (+)
G104111 NA non-coding upstream 112183 746396 ~ 748276 (+)
G104106 NA non-coding upstream 118906 740962 ~ 741553 (+)
G104138 NA non-coding downstream 5545 878059 ~ 878664 (+)
G104179 NA non-coding downstream 14448 886962 ~ 897406 (+)
G104181 NA non-coding downstream 36544 909058 ~ 911619 (+)
G104183 NA non-coding downstream 39279 911793 ~ 912016 (+)
G104184 NA non-coding downstream 40079 912593 ~ 912844 (+)
G104092 NA other upstream 159188 690046 ~ 701271 (+)
G103851 NA other upstream 679437 174996 ~ 181022 (+)
G104761 NA other downstream 280547 1153061 ~ 1153749 (+)
G105036 NA other downstream 826559 1699073 ~ 1700431 (+)
G105042 NA other downstream 836455 1708969 ~ 1710557 (+)
G106019 NA other downstream 1648202 2520716 ~ 2527972 (+)

Expression


Co-expression Network