tgfbr2b (LOC106606173)


Basic Information

Item Value
gene id tgfbr2b
gene name LOC106606173
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1309202 ~ 1390936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934986.1
TTTCCTGTTTCGCGACAGAGAACCCACGTCCATGCTCTGACTCGACGTAGTGTGCCCTCTGCGTTCACAGAGAGATTCTTCAGCAGTGAGTGTTCAGCTGAGCTGGAGAACGGTGTTTGGTGAAGGCAGTCTGCCTCTCGGAAAAGCGCGGCTCAAACTTTCAACGCTGCGATCTTGACTTCCACAAAGCTTTCTCTTTattaaacttgttttttttttattgaagcgGGATATATTTTAATGAACAACTGTGGTAAATATATTTACTGTCATGGAGCGACGTGGGTTTTCCTTACTGTGCTGGGGCACGATACCTTTCCTGTTTATATCCGTTCTGGAACCGAGCGGAGTCGATGGGATGTTCCAGCCGTCCTTCAGTCTCAACAAGTTGTGTAAGTTCTGTGACGTGGAGTCTTCATCCTGCAACGGAACAGGAAGCTGCCTCTCGAACTGCTCCATCACCTCCATCTGTCGTCTGGAGCATGAAGTCTGCATCGCCATCTGGAGGAAGAATGACAGTAACTACAGCATCGAGACTCTGTGTCATGACCCCTCCAAGCCTCTGTACGGCATCGAGCTGGATGACTACAACAGCTCTATGTGTACCATGAAAGAGAAGAAGAGCTCTGGAGGACCGTTGTACATTTGCTCCTGTACTGAGGAGGAGTGTAACGATAACCTGGCCTTCGCTCCCGtggtcGGCCCGACCATCGAGCCCCCGGTGGTATCTATCGTCCTGATCAGCCTGTTGCCCTTACTGGTCCTAGTGGTCGTAGTCATCACTATGTTCTATTGGTACCGAGTCCAACGCCATCGCAAACTCAGCCAGGAACAGTGGGACAGCAAGAAGCCCAAACGCAAGGGCAAAGGTCTGGACTGCAGCATCATGATGGACGACGATGGATCAGACAGCAGCTCAACGCACGCCAACAACCTCAACCACAACACTGAACCCCTTCCCATCGAGCTGGACCTGCAGGTGGGTAAGGGGCGCTTCGCTGAGGTGTTCAAGGCCAAGCTGAGGCAGCCCGGCTCCTCGTCGGACCAGTATGAGACGGTGGCCGTGAAGATCTTCCCTGAGGAAGAGTACGCATCGTGGAAGAACGAGAAGGACATCTTCTCCGACCACGACCTTCGCCACGACAACGTCCTCCACTTCCTCACAGCAGAGGAGAGAAAGATGTCGAAGCAGTACTGGCTGATCACAGCCTTCCACCCCCGAGGAAACCTTCAGGAGTACCTGACCCGTAACCTGGTCTCCTGGGAGGATCTACGGGGTCTGGGCGGGTCCCTGGCCTGCGGGGTGGCACACCTTCACAGTGACCACACGGCCTGCGGGCGACCCAAAGTGCCCATCGTACACCGCGACCTGAAGAGCTCTAACATCCTGGTGAAGCAGGATCTGACCTGTTGTCTGTGTGACTTTGGACTGGGGCTCAGACTGGATAACACCATGACAGTGGATGATCTAGCTAACAGCGGACAGGTGGGCACAGCCAGGTACATGGCTCCTGAAGTGTTGGAGTCCAGGCTGAACCTGGAGAACATTGAGTCGTTCAAGCAGACAGATGTCTATTCTATGGCTCTGGTGTTGTGGGAGATCACCTCCCGCTGTCATGCCATCGGAgaGGTGAAGGACTATGAACCTCCATATGGCTGTAAAGTTCAGATGCATCCTGGTGTGGAGAGCATGAAGGATCACCTCctcagagacagaggaagacctGAGATCCCAGACAGCTGGATCAACCACCAGGGCATAGCCATAGTGTGCGGCTCCATAGAGGAGTGTTGGGACCACGACCCGGAGGCCAGGCTCACAGCCCAGTGCGTGGCCGAACGCTTCAGCGAGATAGAAGACGAGATGGAGAAACTGTCCAGCCGCAGCAGCTCCGACGAGAAGATACCAGCGGAGGAACGGAAGATACCGACCATACCCGAAGAAGAAGGACAGACGATAGCAGAACAGATAGAAGAGGTCAAAGTAGCGGTGGAGAGCTCTGTGAGCGATGAGAagtgagggaagggagagaggacatggaACCCAGGACTAGAATGTCAGTATGTCACAAACACACCACTCATGTTGCTATGGGAACTATAAACAGCCACACCCAAACAAACAGCCCACACCTGGAAGATAGCCAGGACAgtgaatgtactgtattactgtactgtactgctttTACTCTTCAGTATTGTATTACCAGAATGCATACAGTATTTATACTGTATAAAATAAGTATGCACAGTTTACAGTATTtggatgtactgtactgtattatattgGAGGTTTCCCCACTGAAGAGGACAGGACATGACAATCGCAGAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGCAGAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGAAGAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGAAGAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGCAGAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGAAGAGTTTATAACCAAAGACTGAGATTACAGGACATGACAATGGCAGAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGCAGAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGAAGAGTTTATAACCAAAGACTGAGATTACAGGACATGACAATGGAAAATAGTATTACCAAAGACTGAGATTACAGGACATGACAATGGGAGAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGCAGAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGAAGAGTTTATAACCAAAGACTAAGATTACAGGACATGACAATGGAACAGATTATTACCAAAGACTGAGATTACAGGACATGACAATGGCAGAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGAAGAGTTTATAACCAAAGACTGAGATTACAGGACATGACAATGGAAAATAGTATTACCAAAGACTGAGATTACAGGACATGACAATGGGAGAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGCAGAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGAAAAGATTATAACCAAAGACTGAGATTACAGGACATGACAATGGCAGAGATTATAACCAAAGACTGAGATTACAGGACATGGCAATGGAAGAGTTTATAACCAAAGACTGAGATTATAGGACATGACATTGGAATAGTTTATAACCAAAGACTATTCTAACATGTGGGGGGAGTGGGGTAATGTATTCTAGAATGTTGAGGGAGTTGGGTAATGTTCCTGTATTCTAACATGTTGGGGGTGTGGGGTAATGAATTCTAACATGTTGGGGGAGTGGGGTAATGTATTCTAACATGTTGAGGGAGTTGGGTAATGTTCCTGTATTCTAACATGTGGGGTAATGAATTGACAGGTCTGTGTAATAATGTAATAACGAGCCATATTGTAACAGAAATTATAATGACGTGGAGCTCTATTCACACAAGGATTGTAtgtacagtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcattcgTGCGTGTGTTTTTTTACATAGTAATAGTTTTTACTTGTTAGCCAAATAAACAAGCACATTGTAAATATATATGGAATGTAGCTGTACAGAAAATAATCTCCACTCTAGATGTTGTTGTGGAAGCAGAGGAGCATTTCACACACTCTGTCTAAATAACACATTTAACAGGATCTAGACAAATATATTTTATCCTTTGTATTTGTAAGATATTGTAAATCTGTTTTATGaataaagtatttctgtatttACTCATAA
>TU118057
TCTTCAGCAGTGAGTGTTCAGCTGAGCTGGAGAACGGTGTTTGGTGAAGGCAGTCTGCCTCTCGGAAAAGCGCGGCTCAAACTTTCAACGCTGCGATCTTGACTTCCACAAAGCTTTCTCTTTattaaacttgttttttttttattgaagcgGGATATATTTTAATGAACAACTGTGGTAAATATATTTACTGTCATGGAGCGACGTGGGTTTTCCTTACTGTGCTGGGGCACGATACCTTTCCTGTTTATATCCGTTCTGGAACCGAGCGGAGTCGATGGGATGTTCCAGCCGTCCTTCAGTCTCAACAAGTTGTGTAAGTTCTGTGACGTGGAGTCTTCATCCTGCAACGGAACAGGAAGCTGCCTCTCGAACTGCTCCATCACCTCCATCTGTCGTCTGGAGCATGAAGTCTGCATCGCCATCTGGAGGAAGAATGACAGTAACTACAGCATCGAGACTCTGTGTCATGACCCCTCCAAGCCTCTGTACGGCATCGAGCTGGATGACTACAACAGCTCTATGTGTACCATGAAAGAGAAGAAGAGCTCTGGAGGACCGTTGTACATTTGCTCCTGTACTGAGGAGGAGTGTAACGATAACCTGGCCTTCGCTCCCGtggtcGGCCCGACCATCGAGCCCCCGGTGGTATCTATCGTCCTGATCAGCCTGTTGCCCTTACTGGTCCTAGTGGTCGTAGTCATCACTATGTTCTATTGGTACCGAGTCCAACGCCATCGCAAACTCAGCCAGGAACAGTGGGACAGCAAGAAGCCCAAACGCAAGGGCAAAGGTCTGGACTGCAGCATCATGATGGACGACGATGGATCAGACAGCAGCTCAACGCACGCCAACAACCTCAACCACAACAC

Function

NR:

description
TGF-beta receptor type-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934986.1 False 3915 mRNA 0.46 10 1309202 1390936
TU118057 True 872 TUCP 0.50 5 1309278 1352863

Neighbor

gene id symbol gene type direction distance location
rbms3 rbms3 coding upstream 77667 1023461 ~ 1231535 (+)
LOC110515032 LOC106606177 coding upstream 84298 1222130 ~ 1224904 (+)
LOC118936923 NA coding upstream 339674 968616 ~ 969528 (+)
LOC110506977 LOC106595099 coding upstream 400626 905576 ~ 908576 (+)
cmc1 cc068 coding upstream 436688 860459 ~ 872515 (+)
LOC118937323 NA coding downstream 33380 1424316 ~ 1426453 (+)
stt3b stt3b coding downstream 65400 1456336 ~ 1564305 (+)
LOC118937324 NA coding downstream 179374 1570310 ~ 1573421 (+)
LOC118937327 NA coding downstream 197246 1585657 ~ 1588650 (+)
LOC118937328 NA coding downstream 197884 1588820 ~ 1589368 (+)
G104914 NA non-coding upstream 1195 1307158 ~ 1308007 (+)
G104913 NA non-coding upstream 3659 1305244 ~ 1305543 (+)
G104912 NA non-coding upstream 5291 1303636 ~ 1303911 (+)
G104911 NA non-coding upstream 6151 1302428 ~ 1303051 (+)
G104896 NA non-coding upstream 32929 1276032 ~ 1276273 (+)
G104942 NA non-coding downstream 1697 1392633 ~ 1397551 (+)
G104944 NA non-coding downstream 7305 1398241 ~ 1398624 (+)
G104945 NA non-coding downstream 10503 1401439 ~ 1402879 (+)
G104948 NA non-coding downstream 16455 1407391 ~ 1408774 (+)
G104761 NA other upstream 155453 1153061 ~ 1153749 (+)
G104092 NA other upstream 607931 690046 ~ 701271 (+)
G103851 NA other upstream 1128180 174996 ~ 181022 (+)
G105036 NA other downstream 308137 1699073 ~ 1700431 (+)
G105042 NA other downstream 318033 1708969 ~ 1710557 (+)
G106019 NA other downstream 1129780 2520716 ~ 2527972 (+)
G106122 NA other downstream 1327025 2717961 ~ 2718525 (+)
G106240 NA other downstream 1583887 2974823 ~ 3039475 (+)
G104925 NA non-coding downstream 8597 1361460 ~ 1361840 (+)
G104928 NA non-coding downstream 17185 1370048 ~ 1370956 (+)
G104937 NA non-coding downstream 31055 1383918 ~ 1384319 (+)

Expression


Co-expression Network