Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118937327 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 1585657 ~ 1588650 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005034596.1 | False | 339 | mRNA | 0.46 | 3 | 1588182 | 1588650 |
| TU118227 | True | 240 | lncRNA | 0.51 | 2 | 1585657 | 1588473 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118937324 | NA | coding | upstream | 14761 | 1570310 ~ 1573421 (+) |
| stt3b | stt3b | coding | upstream | 23877 | 1456336 ~ 1564305 (+) |
| LOC118937323 | NA | coding | upstream | 161905 | 1424316 ~ 1426453 (+) |
| tgfbr2b | LOC106606173 | coding | upstream | 197246 | 1309202 ~ 1390936 (+) |
| rbms3 | rbms3 | coding | upstream | 356647 | 1023461 ~ 1231535 (+) |
| LOC118937328 | NA | coding | downstream | 170 | 1588820 ~ 1589368 (+) |
| LOC118937325 | NA | coding | downstream | 16490 | 1605140 ~ 1606773 (+) |
| gpd1l | LOC105023484 | coding | downstream | 94911 | 1683561 ~ 1698369 (+) |
| tmem42a | LOC106595323 | coding | downstream | 116239 | 1704889 ~ 1707675 (+) |
| LOC110514512 | LOC105016610 | coding | downstream | 156648 | 1745298 ~ 1794938 (+) |
| G105001 | NA | non-coding | upstream | 47972 | 1538977 ~ 1540210 (+) |
| G104999 | NA | non-coding | upstream | 73141 | 1514533 ~ 1515041 (+) |
| G104997 | NA | non-coding | upstream | 73937 | 1512292 ~ 1514245 (+) |
| G104992 | NA | non-coding | upstream | 95159 | 1492302 ~ 1493023 (+) |
| G104989 | NA | non-coding | upstream | 103563 | 1483937 ~ 1484619 (+) |
| G105014 | NA | non-coding | downstream | 945 | 1589595 ~ 1591453 (+) |
| G105019 | NA | non-coding | downstream | 8936 | 1597586 ~ 1597987 (+) |
| G105020 | NA | non-coding | downstream | 9535 | 1598185 ~ 1599541 (+) |
| G105049 | NA | non-coding | downstream | 45087 | 1633737 ~ 1634417 (+) |
| G105052 | NA | non-coding | downstream | 52172 | 1640822 ~ 1641037 (+) |
| G104761 | NA | other | upstream | 434433 | 1153061 ~ 1153749 (+) |
| cmc1 | cc068 | other | upstream | 715667 | 860459 ~ 872515 (+) |
| G104092 | NA | other | upstream | 886911 | 690046 ~ 701271 (+) |
| G103851 | NA | other | upstream | 1407160 | 174996 ~ 181022 (+) |
| G105036 | NA | other | downstream | 110423 | 1699073 ~ 1700431 (+) |
| G105042 | NA | other | downstream | 120319 | 1708969 ~ 1710557 (+) |
| G106019 | NA | other | downstream | 932066 | 2520716 ~ 2527972 (+) |
| G106122 | NA | other | downstream | 1129311 | 2717961 ~ 2718525 (+) |
| G106240 | NA | other | downstream | 1386173 | 2974823 ~ 3039475 (+) |
