tmem42a (LOC106595323)


Basic Information

Item Value
gene id tmem42a
gene name LOC106595323
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1704889 ~ 1707675 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594953.2
TGGTTGAACCGAGTGAAGCATTTTAGACAAGGAAGTAGTCAAATATGTGACAGGACAGTCTAGTTTAGATGCTAAATAAACATGATTTCAGGTGCGTTTTATGCATTATTAGCGGGCTTTCTTGGAGCCGTCGCCTCCTCGTCAGCCAAGCTATCTCTGGGTTCAGACTACCTCAAAGGGATGTGTGAAACAGGGCTGAAAACCTGGTCTCAGGATGGAAACTACAGGATTATTCCGGAGGAAACATCACCCTGCGAATGGCTCCACATCCCTCTGCGGTTGCTGTGTGGAGGACTGCTGTTCACCAGTAATGCTGTGATGTGGACTTTCTTCTCCAAGGCTCTGagacactcctcctcctcagcccgGGCCACGGTCACCACCACCGCATCCAACTTTGTATCTTCTGCATTCCTTGGGAAGCTGATCTTTGGCGAGACCCACGCAGCACTGTGGTGGGTGGGCATCTCTCTAACGCTGTCAGGTTTACTGGTGCTGCACGGATCAACTTCTCAACCAGCAGAGGCCAAGAAGGAAGAGTGAAGGACTGTCCACATGTGGAATAAGAAGTGTAATAACAATACCACTGTATCAATCGCCCCACTGGACCGCCTCGGCGTTCCACAAACGTTTTCTGGCTCAAATAATCTGGATTTCACGAGAACCGTGTTCCATTACCACAAAGGGCTTTGATGTGACTGTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGATATATCTGACTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACATGGATTCTAACATGTTACACCTGACTGTACATGGATGCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACACCTGACTGTACGTGGATGCTAACATGTTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACATGGATTCTAACATGTTACATCTGACCGTACATGGATTCTAACATGTTACACCTGACTGTACATGGATTCTAACATGTTACACCTGACTGTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACATCTGACTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACATCTGACTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACATCTGACTACATGGATTCTAATGTTACATCTGACTGTACATGGATTCTAACATGTTACATCTGACATGTTTCTCCTCTGTCTTACCGTCTCTGGGTATGATATGACCaaggtctgtttctcctctgtctTACCGTCTCTGGGTATGATATGACCaaggtctgtttctcctctgtctTACTGTCTCTGGGTATGATATGACCaaggtctgtttctcctctgtctTACCGTCTCTGGGTATGATATGACCaaggtctgtttctcctctgtctTACCGTCTCTGGGTATGATATGACCAAGGTCTGCACTCCATACACAAACATGATCAGGCTTTTCTACACTACACATTATTATGCAAACAAATACTTTCTTTAATAGTACCGTTGATATGTATATTTTATTAACAATATTGTAATGACCTGTAAGACTAAATGGGTATCAATTTATTGAAATTAAGAGTTTTGTAAATAAACCTTTACATGAAATATCTTGTCA
>XR_005034588.1
TGGTTGAACCGAGTGAAGCATTTTAGACAAGGAAGTAGTCAAATATGTGACAGGACAGTCTAGTTTAGATGCTAAATAAACATGATTTCAGGTGCGTTTTATGCATTATTAGCGGGCTTTCTTGGAGCCGTCGCCTCCTCGTCAGCCAAGCTATCTCTGGGTTCAGACTACCTCAAAGGGATGTGTGAAACAGGGCTGAAAACCTGGTCTCAGGATGGAAACTACAGGATTATTCCGGAGGAAACATCACCCTGCGAATGGCTCCACATCCCTCTGCGGTTGCTGTGTGGAGGACTGCTGTTCACCAGTAATGCTGTGATGTGGACTTTCTTCTCCAAGGCTCTGagacactcctcctcctcagcccgGGCCACGGTCACCACCACCGCATCCAACTTTGTATCTTCTGCATTCCTTGGGAAGCTGATCTTTGGCGAGACCCACGCAGCACTGTGGTGGGTGGGCATCTCTCTAACGCTGTCAGGTTTACTGGTGCTGCACGGATCAACTTCTCAACCAGCAGAGGCCAAGAAGGAAGAGTGAAGGACTGTCCACATGTGGAATAAGAAGTGTAATAACAATACCACTGTATCAATCGCCCCACTGGACCGCCTCGGCGTTCCACAAACGTTTTCTGGCTCAAATAATCTGGATTTCACGAGAACCGTGTTCCATTACCACAAAGGGCTTTGATGTGACTGTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGATATATCTGACTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACATGGATTCTAACATGTTACACCTGACTGTACATGGATGCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACACCTGACTGTACGTGGATGCTAACATGTTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACATGGATTCTAACATGTTACATCTGACCGTACATGGATTCTAACATGTTACACCTGACTGTACATGGATTCTAACATGTTACACCTGACTGTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACATCTGACTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACATCTGACTACATGGATTCTAACATGTTACATCTGACTGTACATGGATTCTAACATGTTACATCTGACTACATGGATTCTAATGTTACATCTGACTGTACATGGATTCTAACATGTTACATCTGACATGTTTCTCCTCTGTCTTACCGTCTCTGGGTATGATATGACCaagGTCTGCACTCCATACACAAACATGATCAGGCTTTTCTACACTACACATTATTATGCAAACAAATACTTTCTTTAATAGTACCGTTGATATGTATATTTTATTAACAATATTGTAATGACCTGTAAGACTAAATGGGTATCAATTTATTGAAATTAAGAGTTTTGTAAATAAACCTTTACATGAAATATCTTGTCA

Function

NR:

description
transmembrane protein 42-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594953.2 False 1763 mRNA 0.42 3 1704889 1707675
XR_005034588.1 True 1575 mRNA 0.41 4 1704889 1707675

Neighbor

gene id symbol gene type direction distance location
gpd1l LOC105023484 coding upstream 6520 1683561 ~ 1698369 (+)
LOC118937325 NA coding upstream 98116 1605140 ~ 1606773 (+)
LOC118937328 NA coding upstream 115521 1588820 ~ 1589368 (+)
LOC118937327 NA coding upstream 116239 1585657 ~ 1588650 (+)
LOC118937324 NA coding upstream 131468 1570310 ~ 1573421 (+)
LOC110514512 LOC105016610 coding downstream 37623 1745298 ~ 1794938 (+)
slc6a3 slc6a3 coding downstream 109133 1816808 ~ 1853570 (+)
LOC110511503 LOC106605726 coding downstream 157690 1865365 ~ 1901456 (+)
LOC110516539 NA coding downstream 408878 2116553 ~ 2120455 (+)
LOC118944029 NA coding downstream 458446 2166121 ~ 2177996 (+)
G105030 k1143 non-coding upstream 43 1702955 ~ 1704846 (+)
G105083 NA non-coding upstream 8464 1695943 ~ 1696425 (+)
G105078 NA non-coding upstream 25402 1679058 ~ 1679487 (+)
G105074 NA non-coding upstream 31096 1673026 ~ 1673793 (+)
G105069 NA non-coding upstream 38380 1666029 ~ 1666509 (+)
G105091 NA non-coding downstream 14320 1721995 ~ 1722691 (+)
G105107 NA non-coding downstream 48706 1756381 ~ 1757197 (+)
G105111 NA non-coding downstream 59134 1766809 ~ 1771032 (+)
G105043 NA non-coding downstream 90823 1798498 ~ 1799324 (+)
G105039 NA non-coding downstream 91998 1799673 ~ 1799993 (+)
G105036 NA other upstream 4458 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 352026 1309202 ~ 1390936 (+)
G104761 NA other upstream 551140 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 832374 860459 ~ 872515 (+)
G104092 NA other upstream 1003618 690046 ~ 701271 (+)
G105042 NA other downstream 1294 1708969 ~ 1710557 (+)
G106019 NA other downstream 813041 2520716 ~ 2527972 (+)
G106122 NA other downstream 1010286 2717961 ~ 2718525 (+)
G106240 NA other downstream 1267148 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1499122 3006312 ~ 3391033 (+)

Expression


Co-expression Network