LOC118937337


Basic Information

Item Value
gene id LOC118937337
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2978786 ~ 2980193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034604.1
ctataggtcctgttctgatctctatagcctctataggtcctgtcctgatctctatagcctctataggtcctgttctgatctctatagCCTCTATAGgtcctgttctgatctctatagcctctataggtcctgttctgatctctatagcctctataggtCCTGTCCTGATCTCTATaggtcctgttctgatctctatagcctctataggtcctgttctgatctctatagtctctataggccctgttctgatctctatagCCTCTATAGGTCATGTCCTGATCTCTATAGCCTCTATAGGTCCTGTCCTGATCTCTATAGCCTCTATaggtcctgttctgatctctatagtctctataggccctgttctgatctctataggtcatgttctgatctctataggtcctgttctgatctctatagCCTCTATAGGTCATGTTCTGATCTCTATAGCCTCTATAGGTCCTGTCCTGATCTCTATAGGTCCTGTCCTGATCTCTATAGCCTCTATaggtcctgttctgatctctataggtcctgttctgatctctatagCCTCTATAGGTCCTGTCCTGATCTCTATAGcctctataggtcctgttctgatctctat
>XR_005034605.1
cctctataggtcctgtcctgatctctatagcctctataggtcctgttctgatctctatagCCTCTATAGgtcctgttctgatctctatagtctctataggccctgttctgatctctatagCCTCTATAGGTCATGTCCTGATCTCTATAGCCTCTATAGGTCCTGTCCTGATCTCTATAGCCTCTATaggtcctgttctgatctctatagtctctataggccctgttctgatctctataggtcatgttctgatctctataggtcctgttctgatctctatagCCTCTATAGGTCATGTTCTGATCTCTATAGCCTCTATAGGTCCTGTCCTGATCTCTATAGGTCCTGTCCTGATCTCTATAGCCTCTATaggtcctgttctgatctctataggtcctgttctgatctctatagCCTCTATAGGTCCTGTCCTGATCTCTATAGcctctataggtcctgttctgatctctat
>XR_005034606.1
cctgatctctatagcctctataggtcctgttctgatctctatagCCTCTATAGgtcctgttctgatctctatagtctctataggtCCTGTCCTGATCTCTATaggtcctgttctgatctctatagcctctataggtcctgttctgatctctatagtctctataggccctgttctgatctctatagCCTCTATAGGTCATGTCCTGATCTCTATAGCCTCTATAGGTCCTGTCCTGATCTCTATAGCCTCTATaggtcctgttctgatctctatagtctctataggccctgttctgatctctataggtcatgttctgatctctataggtcctgttctgatctctatagCCTCTATAGGTCATGTTCTGATCTCTATAGCCTCTATAGGTCCTGTCCTGATCTCTATAGGTCCTGTCCTGATCTCTATAGCCTCTATaggtcctgttctgatctctataggtcctgttctgatctctatagCCTCTATAGGTCCTGTCCTGATCTCTATAGcctctataggtcctgttctgatctctat
>XR_005034607.1
ctctataggtcctgttctgatctctatagCCTCTATAGGTCCTGTCCTGATCTCTATAGCCTCTATaggtcctgttctgatctctataggtcctgttctgatctctatagCCTCTATAGGTCCTGTCCTGATCTCTATAGcctctataggtcctgttctgatctctat

Function

NR:

description
serine/threonine-protein kinase NIM1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034604.1 False 610 mRNA 0.44 4 2978786 2980193
XR_005034605.1 False 472 mRNA 0.44 3 2978813 2980193
XR_005034606.1 False 537 mRNA 0.44 3 2978829 2980193
XR_005034607.1 True 168 mRNA 0.44 3 2979903 2980193

Neighbor

gene id symbol gene type direction distance location
LOC118937340 NA coding upstream 262 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 558165 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 800790 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 858331 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 1077338 1865365 ~ 1901456 (+)
mboat1 LOC106573215 coding downstream 426994 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1070590 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 1085799 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 1132929 4113122 ~ 4119742 (+)
deptor deptor coding downstream 1256687 4236880 ~ 4302536 (+)
G106238 NA non-coding upstream 7207 2970334 ~ 2971579 (+)
G106229 NA non-coding upstream 29082 2947549 ~ 2949704 (+)
G106224 NA non-coding upstream 37233 2941146 ~ 2941553 (+)
G106194 NA non-coding upstream 105868 2872322 ~ 2872918 (+)
G106170 NA non-coding upstream 166197 2811831 ~ 2812589 (+)
G106247 NA non-coding downstream 7954 2988147 ~ 2989181 (+)
G106252 NA non-coding downstream 24871 3005064 ~ 3005325 (+)
G106253 cdkal non-coding downstream 26119 3006312 ~ 3391033 (+)
G106260 NA non-coding downstream 44940 3025133 ~ 3025905 (+)
G106263 NA non-coding downstream 60063 3040256 ~ 3046547 (+)
G106122 NA other upstream 260261 2717961 ~ 2718525 (+)
G106019 NA other upstream 450814 2520716 ~ 2527972 (+)
G105042 NA other upstream 1268229 1708969 ~ 1710557 (+)
G105036 NA other upstream 1278355 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 1625923 1309202 ~ 1390936 (+)
G106575 NA other downstream 659241 3639434 ~ 3800352 (+)
G106595 NA other downstream 696072 3676265 ~ 3677850 (+)
G106775 NA other downstream 1046882 4027075 ~ 4027594 (+)

Expression


Co-expression Network