ptp4a3b (LOC106596188)


Basic Information

Item Value
gene id ptp4a3b
gene name LOC106596188
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5480975 ~ 5542867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935926.1
CCCGCCCCTATTCTCACAGAACGATTGTGACGCGCGGTCCCcatggagacagaggagggagaaatGTCATTGTCGTTTTAAAATCACATGGACCGAGTTTTGATCGCTCCGTCTGTATGCAATAAAATAGCTACAAACAATGTGAAATTGCTCATAAAAGTATCCAGGAGCTGCTGCCGACCAAGCAGTTTAAGATACCATCAGTAGCTTGGAGACGCGCTGCACTCAGGCCGGCCAGTCGTTGATGGAGTTCTTGCAGGGGAGCGGTGACTACTGCCACGCCCAACATCTCAGCGCTTGAGCCCAGGCCCCCCGGGGGGAGGATGGCCCTGTTGCCCTGCTGCACCTCCCACCCCTGAATGCCCACAGCCAGGTCGCCCTCTCAACCCAGACCCAGCCACCCCCACTCTGACTGTAGACTGACCGACGGACGGCAGGCCCACTAACTCACCAGATGGGGTAGTGAGTGTCGGTGGCCAAGGGCAGCGTAAGCTAACGGACAGCTACCTCTTCACCCTGTCCAACCCCCACTCTATTCCCAGCACACCAAGACACCCTGGACAGGAGAGACTTGAGAGGACCTTGTAAATTCCTCCTGAGGTGGGGTGTTGTTGCTGGGGTTTGTTCCTCCACCTCAGAGAGACTAGCAGGGGTTACCTGCCTTCTTGGCTTCCTGCCTGGCTTCCTGCCTGCTGTGTCAGGACAGTGTAGTGTAGCTGGTGGGCTGGGTGCTCCTCTGTCAGGGTGGGTGCGGGCCCCTGGGTCTGGGTCGACGTCGTGGCGTCTTCTCCTGAGAGTGGGATCCTCAGTGTGTCCAGAATGAACCGTCCGGCTCCCCCCGTCGAGGTCTCCTACAAGAACATGAGGTTCCTCATCACACACAACCCCACCAACGCCACCCTCGACACCTTCATCGAGGACCTGAAGCAGTATGGTGCAACAACAGTGGTGCGGGTGTGTGAGGTCACCTACGACAAGACACGTCTGGAGAAGGATGGCATCACAGTCATGGACTGGGCCTTTGATGACGGTGCCCCTCCGCCCACTAAGATCGTAGATGATTGGCTGAACCTGCTGAAGACTAAGTTCCGTGAGGACCCTGGCTGCTGCGTGGCGGTGCACTGTGTTGCCGGGCTGGGACGGGCTCCTGTGCTGGTGGCTCTGGCTCTGATCGAGGGCGGGATGAAGTATGAGGAGGcagttcagttcatcaggcagaAGCGCAGGGGAGCGAtcaacagcaagcagctgaccTACCTGGAGAAATATCGCTCCAGACAGCGACTACGCTTCAAAGACCCTCACAAACACAAGAACAAGTGCTGTGTGATGTGATGATGTAGTGTGACCCCGCAGCCCGCCTGTTCTGACCCATATAGAACGACTACATGAACTTTAATGTTGGACCGACCTCCACCCTGCTAAGATGCATTTAGGACTTGACCTGTTGTCTGTCTCCATGGGGACAGTTGCCACTGTTCTGTTGGGATTCTTCTGCTTCTCACTCTCAGGGCTGTTAGAGACCATCTCCTCTCTGATGTCTTTGAAAGAACACGTTCGTCCCCAACTGCCGGCCAATTGAACTCATAGAGAGGAAAAACAAACAAGCCCTATTTCCatcaagtacacacacacacacacacacacacacactgacaaactaTTTTGCACTGATTGTGACATActgtgacatacacacacatcgcCATTGACCACCAGACCAACCCCTCAACCAGCAGCAACACTGTCAGCTTGGTCCCAGGCCTGATCGTTCCTCTTTCCTCCCTGCTGCTAGGTAGCACTGACCCAACCCAATGAAACACACCGACCCACCACTAGCTGTCACAACAGGTCTGCATCACCATACACCATGTTAACTGAAAGCCCCTGCTAGCCATGATGACATGAATGAAATAATCATGAACAATAACAGATTTtatcctgtctgtgtgtttttatCTCAATGTTTCAAGGAAATCCAGTTTAAGGTCTTTGTTCAATTGAAATGCCATCCACAGAGCTCAGCCATCTTGCTCCTTGCTCCGTTTTCATAATGCATGTCAGTTAACACTTGTTAGAATCATGTCCTTGTCTCCTTCTTTTTTTGAGGCTATGGGGATGCGGGATGGGACTTAAAATAGGACGAGGTTTTGTGCCGAGTCGCCGTTTTTTTAAATagcaatattttttacattgtgatATGAAACACTCTGGGATTAGGATTCTTCACCACTGGCTGCTTCTGTTGTACAACATGAAGGATCTCAGTGTATCATGTAGGAGTCAGCTGAGCCTGGGTGGGCTTGGTAGGCAACACCGCCtgtgtcccagatggcaccctattccctatatagtgcactacttttgaccagaggtctATGGGCTACAATGCCTTGAAATATACACAAAAACATGGACTCGCACTGATCCTATGGGCTCCGGTCAAAAGTTGAGCACTATATAAggagtagggtgccatctgggacgcGTACTATGCTTTGGGAACGTAAACATGGCGGTGCCCCGTAGTCGTCTCTGGGATGAAAAACAGCCAACTGAACCGTCTGCTCAGAAATAACGTCCTGGCTCTGTATCTGTCAGTGTGGATATAAATGTCTCTCATCTTGCctctgaaatagcaccctattccccttttatagtgcactactatatagCACACTTTTGACTATAgtcctatgggctctggtcaaaagtagtgcactaaatagggaatagggtgcaagaCGCAGTCTCAGTTAAGGACAGGTACTGAAGGAATGACTGGTATCCTTGGAAGAAAGCTGTCACATTTATCTGCTGCCTTGGAAGTAACCCACTTCAGATTGTTCACAGTTAATGAAGTACAAGAAATAAAGTAATTGTTTAAAGTAA
>XM_036935931.1
CTTTCTCACGGGTGTGTGCAGTGTGGATGGACGCTCAGTGTGTGCAGGGGAAGCTCTGCAGAGTAACAGGTTGGAGAGACTCCTTGGAGGACCTGGGGTTTGATGAGCTTGATCAACCTGGTGGTGACAGAGGAATGAAATGCTTCTTGGGCTTTAGCTGTGAGGGAGGAATCTAAAGAAGACTGCTTGTTGTTTCTCTTCTTGTCTAATTTGAGGATGTTTTCTTGTCAAAGAAGTTGTCTCAGCGCTGCACTCAGGCCGGCCAGTCGTTGATGGAGTTCTTGCAGGGGAGCGGTGACTACTGCCACGCCCAACATCTCAGCGCTTGAGCCCAGGCCCCCCGGGGGGAGGATGGCCCTGTTGCCCTGCTGCACCTCCCACCCCTGAATGCCCACAGCCAGGTCGCCCTCTCAACCCAGACCCAGCCACCCCCACTCTGACTGTAGACTGACCGACGGACGGCAGGCCCACTAACTCACCAGATGGGGTAGTGAGTGTCGGTGGCCAAGGGCAGCGTAAGCTAACGGACAGCTACCTCTTCACCCTGTCCAACCCCCACTCTATTCCCAGCACACCAAGACACCCTGGACAGGAGAGACTTGAGAGGACCTTGTAAATTCCTCCTGAGGTGGGGTGTTGTTGCTGGGGTTTGTTCCTCCACCTCAGAGAGACTAGCAGGGGTTACCTGCCTTCTTGGCTTCCTGCCTGGCTTCCTGCCTGCTGTGTCAGGACAGTGTAGTGTAGCTGGTGGGCTGGGTGCTCCTCTGTCAGGGTGGGTGCGGGCCCCTGGGTCTGGGTCGACGTCGTGGCGTCTTCTCCTGAGAGTGGGATCCTCAGTGTGTCCAGAATGAACCGTCCGGCTCCCCCCGTCGAGGTCTCCTACAAGAACATGAGGTTCCTCATCACACACAACCCCACCAACGCCACCCTCGACACCTTCATCGAGGACCTGAAGCAGTATGGTGCAACAACAGTGGTGCGGGTGTGTGAGGTCACCTACGACAAGACACGTCTGGAGAAGGATGGCATCACAGTCATGGACTGGGCCTTTGATGACGGTGCCCCTCCGCCCACTAAGATCGTAGATGATTGGCTGAACCTGCTGAAGACTAAGTTCCGTGAGGACCCTGGCTGCTGCGTGGCGGTGCACTGTGTTGCCGGGCTGGGACGGGCTCCTGTGCTGGTGGCTCTGGCTCTGATCGAGGGCGGGATGAAGTATGAGGAGGcagttcagttcatcaggcagaAGCGCAGGGGAGCGAtcaacagcaagcagctgaccTACCTGGAGAAATATCGCTCCAGACAGCGACTACGCTTCAAAGACCCTCACAAACACAAGAACAAGTGCTGTGTGATGTGATGATGTAGTGTGACCCCGCAGCCCGCCTGTTCTGACCCATATAGAACGACTACATGAACTTTAATGTTGGACCGACCTCCACCCTGCTAAGATGCATTTAGGACTTGACCTGTTGTCTGTCTCCATGGGGACAGTTGCCACTGTTCTGTTGGGATTCTTCTGCTTCTCACTCTCAGGGCTGTTAGAGACCATCTCCTCTCTGATGTCTTTGAAAGAACACGTTCGTCCCCAACTGCCGGCCAATTGAACTCATAGAGAGGAAAAACAAACAAGCCCTATTTCCatcaagtacacacacacacacacacacacacacactgacaaactaTTTTGCACTGATTGTGACATActgtgacatacacacacatcgcCATTGACCACCAGACCAACCCCTCAACCAGCAGCAACACTGTCAGCTTGGTCCCAGGCCTGATCGTTCCTCTTTCCTCCCTGCTGCTAGGTAGCACTGACCCAACCCAATGAAACACACCGACCCACCACTAGCTGTCACAACAGGTCTGCATCACCATACACCATGTTAACTGAAAGCCCCTGCTAGCCATGATGACATGAATGAAATAATCATGAACAATAACAGATTTtatcctgtctgtgtgtttttatCTCAATGTTTCAAGGAAATCCAGTTTAAGGTCTTTGTTCAATTGAAATGCCATCCACAGAGCTCAGCCATCTTGCTCCTTGCTCCGTTTTCATAATGCATGTCAGTTAACACTTGTTAGAATCATGTCCTTGTCTCCTTCTTTTTTTGAGGCTATGGGGATGCGGGATGGGACTTAAAATAGGACGAGGTTTTGTGCCGAGTCGCCGTTTTTTTAAATagcaatattttttacattgtgatATGAAACACTCTGGGATTAGGATTCTTCACCACTGGCTGCTTCTGTTGTACAACATGAAGGATCTCAGTGTATCATGTAGGAGTCAGCTGAGCCTGGGTGGGCTTGGTAGGCAACACCGCCtgtgtcccagatggcaccctattccctatatagtgcactacttttgaccagaggtctATGGGCTACAATGCCTTGAAATATACACAAAAACATGGACTCGCACTGATCCTATGGGCTCCGGTCAAAAGTTGAGCACTATATAAggagtagggtgccatctgggacgcGTACTATGCTTTGGGAACGTAAACATGGCGGTGCCCCGTAGTCGTCTCTGGGATGAAAAACAGCCAACTGAACCGTCTGCTCAGAAATAACGTCCTGGCTCTGTATCTGTCAGTGTGGATATAAATGTCTCTCATCTTGCctctgaaatagcaccctattccccttttatagtgcactactatatagCACACTTTTGACTATAgtcctatgggctctggtcaaaagtagtgcactaaatagggaatagggtgcaagaCGCAGTCTCAGTTAAGGACAGGTACTGAAGGAATGACTGGTATCCTTGGAAGAAAGCTGTCACATTTATCTGCTGCCTTGGAAGTAACCCACTTCAGATTGTTCACAGTTAATGAAGTACAAGAAATAAAGTAATTGTTTAAAGTAA
>TU123438
CACGGGTGTGTGCAGTGTGGATGGACGCTCAGTGTGTGCAGGGGAAGCTCTGCAGAGTAACAGGTTGGAGAGACTCCTTGGAGGACCTGGGGTTTGATGAGCTTGATCAACCTGGTGGTGACAGAGGAATGAAATGCTTCTTGGGCTTTAGCTGTGAGGGAGGAATCTAAAGAAGACTGCTTGTTGTTTCTCTTCTTGTCTAATTTGAGGATGTTTTCTTGTCAAAGAAGTTGTCTCAGCGCTGCACTCAGGCCGGCCAGTCGTTGATGGAGTTCTTGCAGGGGAGCGGTGACTACTGCCACGCCCAACATCTCAGCGCTTGAGCCCAGGCCCCCCGGGGGGAGGATGGCCCTGTTGCCCTGCTGCACCTCCCACCCCTGAATGCCCACAGCCAGGTCGCCCTCTCAACCCAGACCCAGCCACCCCCACTCTGACTGTAGACTGACCGACGGACGGCAGGCCCACTAACTCACCAGATGGGGTAGTGAGTGTCGGTGGCCAAGGGCAGCGTAAGCTAACGGACAGCTACCTCTTCACCCTGTCCAACCCCCACTCTATTCCCAGCACACCAAGACACCCTGGACAGGAGAGACTTGAGAGGACCTTGTAAATTCCTCCTGAGGTGGGGTGTTGTTGCTGGGGTTTGTTCCTCCACCTCAGAGAGACTAGCAGGGGTTACCTGCCTTCTTGGCTTCCTGCCTGGCTTCCTGCCTGCTGTGTCAGGACAGTGTAGTGTAGCTGGTGGGCTGGGTGCTCCTCTGTCAGGGTGGGTGCGGGCCCCTGGGTCTGGGTCGACGTCGTGGCGTCTTCTCCTGAGAGTGGGATCCTCAGTGTGTCCAGAATGAACCGTCCGGCTCCCCCCGTCGAGGTCTCCTACAAGAACATGAGGTTCCTCATCACACACAACCCCACCAACGCCACCCTCGACACCTTCATCGAGGACCTGAAGCAGTATGGTGCAACAACAGTGGTGCGGGTGTGTGAGGTCACCTACGACAAGACACGTCTGGAGAAGGATGGCATCACAGTCATGGACTGGGCCTTTGATGACGGTGCCCCTCCGCCCACTAAGATCGTAGATGATTGGCTGAACCTGCTGAAGACTAAGTTCCGTGAGGACCCTGGCTGCTGCGTGGCGGTGCACTGTGTTGCCGGGCTGGGACGGGCTCCTGTGCTGGTGGCTCTGGCTCTGATCGAGGGCGGGATGAAGTATGAGGAGGcagttcagttcatcaggcagaAGCGCAGGGGAGCGAtcaacagcaagcagctgaccTACCTGGAGAAATATCGCTCCAGACAGCGACTACGCTTCAAAGACCCTCACAAACACAAGAACAAGTGCTGTGTGATGTGATGATGTAGTGTGACCCCGCAGCCCGCCTGTTCTGACCCATATAGAACGACTACATGAACTTTAATGTTGGACCGACCTCCACCCTGCTAAGATGCATTTAGGACTTGACCTGTTGTCTGTCTCCATGGGGACAGTTGCCACTGTTCTGTTGGGATTCTTCTGCTTCTCACTCTCAGGGCTGTTAGAGACCATCTCCTCTCTGATGTCTTTGAAAGAACACGTTCGTCCCCAACTGCCGGCCAATTGAACTCATAGAGAGGAAAAACAAACAAGCCCTATTTCCatcaagtacacacacacacacacacacacacacactgacaaactaTTTTGCACTGATTGTGACATActgtgacatacacacacatcgcCATTGACCACCAGACCAACCCCTCAACCAGCAGCAACACTGTCAGCTTGGTCCCAGGCCTGATCGTTCCTCTTTCCTCCCTGCTGCTAGGTAGCACTGACCCAACCCAATGAAACACACCGACCCACCACTAGCTGTCACAACAGGTCTGCATCACCATACACCATGTTAACTGAAAGCCCCTGCTAGCCATGATGACATGAATGAAATAATCATGAACAATAACAGATTTtatcctgtctgtgtgtttttatCTCAATGTTTCAAGGAAATCCAGTTTAAGGTCTTTGTTCAATTGAAATGCCATCCACAGAGCTCAGCCATCTTGCTCCTTGCTCCGTTTTCATAATGCATGTCAGTTAACACTTGTTAGAATCATGTCCTTGTCTCCTTCTTTTTTTGAGGCTATGGGGATGCGGGATGGGACTTAAAATAGGACGAGGTTTTGTGCCGAGTCGCCGTTTTTTTAAATagcaatattttttacattgtgatATGAAACACTCTGGGATTAGGATTCTTCACCACTGGCTGCTTCTGTTGTACAACATGAAGGATCTCAGTGTATCATGTAGGAGTCAGCTGAGCCTGGGTGGGCTTGGTAGGCAACACCGCCtgtgtcccagatggcaccctattccctatatagtgcactacttttgaccagaggtctATGGGCTACAATGCCTTGAAATATACACAAAAACATGGACTCGCACTGATCCTATGGGCTCCGGTCAAAAGTTGAGCACTATATAAggagtagggtgccatctgggacgcGTACTATGCTTTGGGAACGTAAACATGGCGGTGCCCCGTAGTCGTCTCTGGGATGAAAAACAGCCAACTGAACCGTCTGCTCAGAAATAACGTCCTGGCTCTGTATCTGTCAGTGTGGATATAAATGTCTCTCATCTTGCctctgaaatagcaccctattccccttttatagtgcactactatatagCACACTTTTGACTATAgtcctatgggctctggtcaaaagtagtgcactaaatagggaatagggtgcaagaCGCAGTCTCAGTTAAGGACAGGTACTGAAGGAATGACTGGTATCCTTGGAAGAAAGCTGTCACATTTATCTGCTGCCTTGGAAGTAACCCACTTCAGATTGTTCACAGTTAATGAAGTACAAGAAATAAAGTAATTGTTTAAAGT

Function

NR:

description
PREDICTED: protein tyrosine phosphatase type IVA 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935926.1 False 2892 mRNA 0.51 6 5480975 5542867
XM_036935931.1 False 2920 mRNA 0.51 6 5506540 5542867
TU123438 True 2912 TUCP 0.51 6 5506546 5542865

Neighbor

gene id symbol gene type direction distance location
ccn4b wisp1 coding upstream 23845 5451499 ~ 5457130 (+)
tg LOC106573164 coding upstream 33775 5348252 ~ 5447200 (+)
phf20l1 LOC100196869 coding upstream 131303 5321554 ~ 5349672 (+)
ccdc127a cc127 coding upstream 170940 5306276 ~ 5310035 (+)
LOC118937366 NA coding upstream 195234 5283628 ~ 5285741 (+)
dync1i1 LOC105016552 coding downstream 127 5542994 ~ 5572618 (+)
LOC110506279 LOC106595015 coding downstream 32499 5575366 ~ 5592253 (+)
jarid2a LOC106573577 coding downstream 73129 5615996 ~ 5753847 (+)
mylipb LOC106596795 coding downstream 269380 5812247 ~ 5839646 (+)
LOC110505528 gmpr coding downstream 298650 5841517 ~ 5854355 (+)
G108567 NA non-coding upstream 20538 5459506 ~ 5460437 (+)
G108543 NA non-coding upstream 61194 5418398 ~ 5419781 (+)
G108554 NA non-coding upstream 79129 5401556 ~ 5401846 (+)
G108551 NA non-coding upstream 82381 5398337 ~ 5398594 (+)
G108549 NA non-coding upstream 89309 5391422 ~ 5391666 (+)
G108583 NA non-coding downstream 30584 5573451 ~ 5575009 (+)
G108588 LOC106573343 non-coding downstream 57796 5600663 ~ 5602911 (+)
G108584 NA non-coding downstream 62116 5604983 ~ 5606316 (+)
G108621 NA non-coding downstream 69549 5612416 ~ 5613037 (+)
G108622 NA non-coding downstream 70718 5613585 ~ 5614123 (+)
G108354 LOC106573122 other upstream 181042 5296179 ~ 5299933 (+)
G108280 NA other upstream 343983 5136356 ~ 5136992 (+)
G108048 NA other upstream 622701 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 669400 4808739 ~ 4811575 (+)
G107922 NA other upstream 735389 4744168 ~ 4745586 (+)
G108682 NA other downstream 177098 5719965 ~ 5725579 (+)
G108702 NA other downstream 237347 5780214 ~ 5782921 (+)
G108733 NA other downstream 357644 5900511 ~ 5900950 (+)
LOC110505637 LOC106573538 other downstream 411019 5953886 ~ 5958813 (+)
G108598 NA non-coding upstream 13802 5491991 ~ 5492744 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010804 ptp4a3b coding NC_007127.7 CM002900.2 31453980 ~ 31505802 (-)
bowfin (Amia calva) AMCG00021720 ptp4a3,LOC103029087,LOC108436585,LOC107587801,LOC107714615,LOC107552859,LOC107704902,LOC107724783 coding CM030130.1 CM030130.1 26784119 ~ 26802985 (+)