LOC118937376


Basic Information

Item Value
gene id LOC118937376
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6092079 ~ 6093940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936174.1
tacaggacagacaggacacccaTCACTATCAGACATGTTACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTCACCAGGTCTACAGGACACCCATCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGGTCTACAGGACACTCATCACTATCAGACATGTCACCACGTCTACAGGACACTCATCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGGTCTACAGGGCAGACAGGACACTCATCACTATCAGACATGTTAccaggtctgtctgtcctgtctacaGGACAGACAGTAACTCTCATCTCTTTCTGGACAACAGAAATTACAATATAACTATTTGGgggctgatctagaatcagatcCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTTCTGATCTAGAATCAGATCCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCTCCCCTGTCCAAGTAAACTTACTGATCTAGAATCAGACCCCCCCCCCTGTTCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTACGGATCTAGAATCAGACCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAAACTTACTGATTTTGATCTAAAAGCCAAAACTGATCCTAAAACTCTTACTATGACAAAATTGAAACATGGTCTCCCA
>XM_036936180.1
tcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTCACCAGGTCTACAGGACACCCATCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGGTCTACAGGACACTCATCACTATCAGACATGTCACCACGTCTACAGGACACTCATCACTATCAGACATGTTACCAGGTCTACAGGACACTCATCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGGTCTACAGGGCAGACAGGACACTCATCACTATCAGACATGTTAccaggtctgtctgtcctgtctacaGGACAGACAGTAACTCTCATCTCTTTCTGGACAACAGAAATTACAATATAACTATTTGGgggctgatctagaatcagatcCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTTCTGATCTAGAATCAGATCCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCTCCCCTGTCCAAGTAAACTTACTGATCTAGAATCAGACCCCCCCCCCTGTTCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTACGGATCTAGAATCAGACCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAAACTTACTGATTTTGATCTAAAAGCCAAAACTGATCCTAAAACTCTTACTATGACAAAATTGAAACATGGTCTCCCA
>XM_036936182.1
tcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTCACCAGGTCTACAGGACACCCATCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGGTCTACAGGGCAGACAGGACACTCATCACTATCAGACATGTTAccaggtctgtctgtcctgtctacaGGACAGACAGTAACTCTCATCTCTTTCTGGACAACAGAAATTACAATATAACTATTTGGgggctgatctagaatcagatcCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTTCTGATCTAGAATCAGATCCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCTCCCCTGTCCAAGTAAACTTACTGATCTAGAATCAGACCCCCCCCCCTGTTCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTACGGATCTAGAATCAGACCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAAACTTACTGATTTTGATCTAAAAGCCAAAACTGATCCTAAAACTCTTACTATGACAAAATTGAAACATGGTCTCCCA
>XM_036936179.1
gacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTCACCAGGTCTACAGGACACCCATCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGGTCTACAGGACACTCATCACTATCAGACATGTCACCACGTCTACAGGACACTCATCACTATCAGACATGTTACCAGGTCTACAGGACACTCATCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGGTCTACAGGGCAGACAGGACACTCATCACTATCAGACATGTTAccaggtctgtctgtcctgtctacaGGACAGACAGTAACTCTCATCTCTTTCTGGACAACAGAAATTACAATATAACTATTTGGgggctgatctagaatcagatcCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTTCTGATCTAGAATCAGATCCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCTCCCCTGTCCAAGTAAACTTACTGATCTAGAATCAGACCCCCCCCCCTGTTCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTACGGATCTAGAATCAGACCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAAACTTACTGATTTTGATCTAAAAGCCAAAACTGATCCTAAAACTCTTACTATGACAAAATTGAAACATGGTCTCCCA
>XM_036936186.1
gacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTCACCAGGTCTACAGGACACCCATCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGGTCTACAGGACACTCATCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGGTCTACAGGGCAGACAGGACACTCATCACTATCAGACATGTTAccaggtctgtctgtcctgtctacaGGACAGACAGTAACTCTCATCTCTTTCTGGACAACAGAAATTACAATATAACTATTTGGgggctgatctagaatcagatcCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTTCTGATCTAGAATCAGATCCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCTCCCCTGTCCAAGTAAACTTACTGATCTAGAATCAGACCCCCCCCCCTGTTCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTACGGATCTAGAATCAGACCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAAACTTACTGATTTTGATCTAAAAGCCAAAACTGATCCTAAAACTCTTACTATGACAAAATTGAAACATGGTCTCCCA
>XM_036936191.1
tctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTCACCAGGTCTACAGGACACCCATCACTATCAGACATGTCACCACgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGGTCTACAGGACACTCATCACTATCAGACATGTCACCACGTCTACAGGACACTCATCACTATCAGACATGTTACCAGGTCTACAGGACACTCATCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGGTCTACAGGGCAGACAGGACACTCATCACTATCAGACATGTTAccaggtctgtctgtcctgtctacaGGACAGACAGTAACTCTCATCTCTTTCTGGACAACAGAAATTACAATATAACTATTTGGgggctgatctagaatcagatcCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTTCTGATCTAGAATCAGATCCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCTCCCCTGTCCAAGTAAACTTACTGATCTAGAATCAGACCCCCCCCCCTGTTCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTACGGATCTAGAATCAGACCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAAACTTACTGATTTTGATCTAAAAGCCAAAACTGATCCTAAAACTCTTACTATGACAAAATTGAAACATGGTCTCCCA
>TU123731
acaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacagacaggacacccaTCACTATCAGACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936174.1 False 1627 mRNA 0.47 3 6092079 6093940
XM_036936180.1 False 1590 mRNA 0.47 3 6092145 6093940
XM_036936182.1 False 1485 mRNA 0.47 3 6092145 6093940
XM_036936179.1 False 1609 mRNA 0.47 2 6092182 6093940
XM_036936186.1 False 1486 mRNA 0.47 3 6092182 6093940
XM_036936191.1 False 1470 mRNA 0.47 2 6092415 6093940
TU123731 True 203 lncRNA 0.36 2 6092221 6092461

Neighbor

gene id symbol gene type direction distance location
setd2 LOC106593284 coding upstream 42578 6002992 ~ 6049501 (+)
LOC110505679 LOC106579367 coding upstream 89814 5976200 ~ 6002265 (+)
LOC118937375 NA coding upstream 112189 5978266 ~ 5979890 (+)
LOC110505637 LOC106573538 coding upstream 136634 5953886 ~ 5958813 (+)
LOC110505528 gmpr coding upstream 237905 5841517 ~ 5854355 (+)
ccdc12 ccd12 coding downstream 137429 6231369 ~ 6250042 (+)
cep72 LOC106573558 coding downstream 192618 6286558 ~ 6312599 (+)
trip13 LOC106590995 coding downstream 284433 6378373 ~ 6389788 (+)
nkd2b LOC106574162 coding downstream 308736 6402676 ~ 6499698 (+)
zgc:158766 LOC106590969 coding downstream 451428 6545368 ~ 6629469 (+)
G108773 NA non-coding upstream 4462 6087176 ~ 6087617 (+)
G108789 NA non-coding upstream 6166 6083136 ~ 6085913 (+)
G108760 NA non-coding upstream 95953 5995802 ~ 5996126 (+)
G108758 NA non-coding upstream 98280 5993533 ~ 5993799 (+)
G108756 NA non-coding upstream 108308 5983276 ~ 5983771 (+)
G108779 LOC106573589 non-coding downstream 23897 6117837 ~ 6119044 (+)
G108799 NA non-coding downstream 39436 6133376 ~ 6134440 (+)
G108802 NA non-coding downstream 42835 6136775 ~ 6137832 (+)
G108805 LOC106594197 non-coding downstream 57772 6151712 ~ 6199341 (+)
G108818 NA non-coding downstream 83314 6177254 ~ 6178243 (+)
G108775 LOC106606109 other upstream 33744 6056996 ~ 6058335 (+)
G108733 NA other upstream 191129 5900511 ~ 5900950 (+)
G108702 NA other upstream 309435 5780214 ~ 5782921 (+)
G108874 LOC106573552 other downstream 188131 6282071 ~ 6285940 (+)
G109020 NA other downstream 539138 6633078 ~ 6633913 (+)
rbm24b LOC106596654 other downstream 762146 6855864 ~ 6868976 (+)
malsu1 malsu1 other downstream 814607 6908511 ~ 6911256 (+)

Expression


Co-expression Network