smpd5 (LOC106577403)


Basic Information

Item Value
gene id smpd5
gene name LOC106577403
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6897498 ~ 6908200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936521.1
tgggtttataagcgcgaaTCCGCGTTTAATAACCCCATATACCTATAAACCCTTATACTGTTCGTATAAGGAAATATGTTCAACTCGGTTGCCATTTCAGACGAGCACGCACACGGTGGGAAATAAGCGGCATGCACGCGCAAACTGTCTAGACTGGAGTTGGCTGCTCCCCGCGCGGGACAAGTCTTACACTGGTCGCTGGAATCCTTGTCTTCTGTTTTATACAGGAATATTGAATGAAAAATATCCACAGCATGATAAGGCCAACTTAGCAGTAGCCATGCTTACATGTATTTAGACGGATAAATTCACATTTTATGAAGGAAGTGGACTCTTCTATACAGACAGAggtgactgaaggagggaggCATGTCTCTGCGGGAGTCCCCATTCCCCAACAGCTTTGTGGAGGGCCTCCATGCAGTGAGCTGGGGTCTCATCCTGCCCTGCTTCTGGTTCCTTGACCGCCTCATTGCCATCTGCATGTCCACCAGCCTGGAACGCACCCAGCGGCACGAGCAGGAGTGTTACCTCCACCCTCTCAAGGTGTTCTTCGGCTTCATCCTCTTCCTCGCCCTCTTCCTGTTCACGGCTCCCCTGGCATTCCTGGGGTTCCTGTTTTGGGCTCCCCTCCAGGCTGCCCGAAGGCCCTTCTCCTACCACCACGAGCCCCTGTCGAGGCCAGCACCAgctgaggagggggagaggaaccTGGGCTTTGAGGCAGGGGCCAACAAGGCCACTTTTGGTTTTGCTACTGCCAACCTGTGCCTATTGCCGGACGGCATCGCACGCTTCAACAACCTGGGGCACACGCAGCGCCGTGCCACCGCCATCGGCCGGAGCATCGTGCAGGGCGTGAACCGGCCACACATCCGCATCTTCGTGGACTCTCCCAGTAGCTGTGGCACCCTCAGCCCCTCCAGTAGCCTGCTCCCCGGCCCCTCCACCACCAGCCCTGCCTCATACGGCGCTACAGACCCAGCCTGCCAGCCACCACCCCAGGCTCATTCAGACGAGGACCAAGCTGACGGAGCGGTCCCAACAACGACACCCCCCAAACCCAGTGACTCAAACTATGTGGTGTACGTGCCCTGTGACGACACTGAGGAGTCTTCCCATTCTCCCGCCCCCGTCATCAACACCAACCACAACTCCAACCAGCAGGACCGGAAGGGCCACAGGAACCCTCCGCGGGCCCTACGCACTCAGGGGGTCGCCCAGCGCGGTCAGGCTGGGCCAGACGACGTGCCCTGGGAGGTGTCTTCTCTCTTCCCGGCCAACGTGGACATCCTGTGTCTGGAGGAGGTGTTTGATAAGAGGGCAGCTGTGAAGCTGACCAACACCCTGGGGCCCCTGTTCaaccacatactgtatgatgtagggGTGTACGCCTGCCAGCCTCCCGGCAGCTGCTCCTCCTTTAAGTTCTTCAACAGCGGCCTGTTCCTGGCCAGCCGTTACCCAGTGCTGGAGGCCCAGTACCACTGCTTCCCTAACGCCCGGGGGGAGGATGCCCTGGCTGCTAAAGGCCTGCTCTCTGCCAAGGTGCTAGTTGGCCAGAATCAGAAAGAGAAGAAGCTGGTTGGATATTTTAACTGCACACACCTCCATGCACCTGAAGGTGAAGGGGAGATCCGCTGTGAGCAGCTCAACATGCTCACCAAGTGGATCCAGGAGTTCCAGGTGACCAATAGCAAGCCTGATGAGGTGGTCGTGTTTGACGTGCTTTCTGGGGATTTCAACTTCGACAACTGCTCACCTGATGACAGTCTAGAACAGAAGCACAGTCTGTTTGAGGAGTACAGAGACCCCTGCAGGGCCGGGCCGGGCCAGGAGAAGCCCTGGGTCATTGGCACTTTGCTTGAACAGCCTACTCTGTATCATGAGGATGTAAGGACCCCAGAGAATCTTCAAAGgaccctggagagagaggagttgaggaaACAGTACATCTCCTCTCCTGTGGCCCTGGAAGGCTGTCCCATGGTCTACCCTGAGTTGGGTCAGCCTTGGGTGGGGCGCCGCATCGACTACATCCTCTACAGAGAGAGCTCCATCTCCAAGCACTGCCGAACTGAAATTGAGGAGTTCACCTTTGTGACCCAGCTTGCTGGCCTCACCGACCACATTCCAGTGGGCCTGAGGCTCAATGTGTTCCTGGACTCAGACACTGCCCAGTCCGAATGAGTGACAACCCAAGCCTGAATCCATTTGGGGAGAAGGGAAATATATGTATTtcattccaaatggcacactattccctatatagtgcactacttttgaccaaagtcctattggtgccatttgggatgcaggcatcTACTatgcaccacacacaccacacgggTACAACAATTACAAAGTAAACAGACCaatgaaaaatgccaaggggttaTGTTGGGGGTGAGCTGGCCTGTATCCTCAGTCAGAGAGATGGAAcgggcatcccaaatggcaccctattccctatctagagATGGTAAGGCatcccaaatgactccctatatagtgcactacatttgtcagagccctatggggaatacgGTACAGTTTTGGACAATACCATTGTCTGGTGGCTGCTGGATTAAAACCGATATTGATTTGCTGGTGCTGCATACAGAGACCAAATCTAAGCTGAATAATGACATGACTCACTGAGTAATATGTGGGCCTTTTCAGGTCAGGGGCATTGGTAACTCACTTTTATACAGTCAATCTTACTTTTGGTAAGTTGTTGGTActgaaaatattttatattttttcacTCTGATTTCACGATGATGCCTGTGGAAAATAAACGATCTCACTGAAATGCA
>XM_036936518.1
tttataagcgcgaaTCCGCGTTTAATAACCCCATATACCTATAAACCCTTATACTGTTCGTATAAGGAAATATGTTCAACTCGGTTGCCATTTCAGACGAGCACGCACACGGTGGGAAATAAGCGGCATGCACGCGCAAACTGTCTAGACTGGAGTTGGCTGCTCCCCGCGCGGGACAAGTCTTACACTGGTCGCTGGAATCCTTGTCTTCTGTTTTATACAGGAATATTGAATGAAAAATATCCACAGCATGATAAGGCCAACTTAGCAGTAGCCATGCTTACATGTATTTAGACGGATAAATTCACATTTTATGAAGGAAGTGGACTCTTCTATACAGACAGATTGCAGAGTCTGTCAGATGGTGAATAACCAGAGTGAGGTGAGCAGCTGGGAGCCCTGATGCCTGCTCTCCCTATTTGTGTCCAGAggtgactgaaggagggaggCATGTCTCTGCGGGAGTCCCCATTCCCCAACAGCTTTGTGGAGGGCCTCCATGCAGTGAGCTGGGGTCTCATCCTGCCCTGCTTCTGGTTCCTTGACCGCCTCATTGCCATCTGCATGTCCACCAGCCTGGAACGCACCCAGCGGCACGAGCAGGAGTGTTACCTCCACCCTCTCAAGGTGTTCTTCGGCTTCATCCTCTTCCTCGCCCTCTTCCTGTTCACGGCTCCCCTGGCATTCCTGGGGTTCCTGTTTTGGGCTCCCCTCCAGGCTGCCCGAAGGCCCTTCTCCTACCACCACGAGCCCCTGTCGAGGCCAGCACCAgctgaggagggggagaggaaccTGGGCTTTGAGGCAGGGGCCAACAAGGCCACTTTTGGTTTTGCTACTGCCAACCTGTGCCTATTGCCGGACGGCATCGCACGCTTCAACAACCTGGGGCACACGCAGCGCCGTGCCACCGCCATCGGCCGGAGCATCGTGCAGGGCGTGAACCGGCCACACATCCGCATCTTCGTGGACTCTCCCAGTAGCTGTGGCACCCTCAGCCCCTCCAGTAGCCTGCTCCCCGGCCCCTCCACCACCAGCCCTGCCTCATACGGCGCTACAGACCCAGCCTGCCAGCCACCACCCCAGGCTCATTCAGACGAGGACCAAGCTGACGGAGCGGTCCCAACAACGACACCCCCCAAACCCAGTGACTCAAACTATGTGGTGTACGTGCCCTGTGACGACACTGAGGAGTCTTCCCATTCTCCCGCCCCCGTCATCAACACCAACCACAACTCCAACCAGCAGGACCGGAAGGGCCACAGGAACCCTCCGCGGGCCCTACGCACTCAGGGGGTCGCCCAGCGCGGTCAGGCTGGGCCAGACGACGTGCCCTGGGAGGTGTCTTCTCTCTTCCCGGCCAACGTGGACATCCTGTGTCTGGAGGAGGTGTTTGATAAGAGGGCAGCTGTGAAGCTGACCAACACCCTGGGGCCCCTGTTCaaccacatactgtatgatgtagggGTGTACGCCTGCCAGCCTCCCGGCAGCTGCTCCTCCTTTAAGTTCTTCAACAGCGGCCTGTTCCTGGCCAGCCGTTACCCAGTGCTGGAGGCCCAGTACCACTGCTTCCCTAACGCCCGGGGGGAGGATGCCCTGGCTGCTAAAGGCCTGCTCTCTGCCAAGGTGCTAGTTGGCCAGAATCAGAAAGAGAAGAAGCTGGTTGGATATTTTAACTGCACACACCTCCATGCACCTGAAGGTGAAGGGGAGATCCGCTGTGAGCAGCTCAACATGCTCACCAAGTGGATCCAGGAGTTCCAGGTGACCAATAGCAAGCCTGATGAGGTGGTCGTGTTTGACGTGCTTTCTGGGGATTTCAACTTCGACAACTGCTCACCTGATGACAGTCTAGAACAGAAGCACAGTCTGTTTGAGGAGTACAGAGACCCCTGCAGGGCCGGGCCGGGCCAGGAGAAGCCCTGGGTCATTGGCACTTTGCTTGAACAGCCTACTCTGTATCATGAGGATGTAAGGACCCCAGAGAATCTTCAAAGgaccctggagagagaggagttgaggaaACAGTACATCTCCTCTCCTGTGGCCCTGGAAGGCTGTCCCATGGTCTACCCTGAGTTGGGTCAGCCTTGGGTGGGGCGCCGCATCGACTACATCCTCTACAGAGAGAGCTCCATCTCCAAGCACTGCCGAACTGAAATTGAGGAGTTCACCTTTGTGACCCAGCTTGCTGGCCTCACCGACCACATTCCAGTGGGCCTGAGGCTCAATGTGTTCCTGGACTCAGACACTGCCCAGTCCGAATGAGTGACAACCCAAGCCTGAATCCATTTGGGGAGAAGGGAAATATATGTATTtcattccaaatggcacactattccctatatagtgcactacttttgaccaaagtcctattggtgccatttgggatgcaggcatcTACTatgcaccacacacaccacacgggTACAACAATTACAAAGTAAACAGACCaatgaaaaatgccaaggggttaTGTTGGGGGTGAGCTGGCCTGTATCCTCAGTCAGAGAGATGGAAcgggcatcccaaatggcaccctattccctatctagagATGGTAAGGCatcccaaatgactccctatatagtgcactacatttgtcagagccctatggggaatacgGTACAGTTTTGGACAATACCATTGTCTGGTGGCTGCTGGATTAAAACCGATATTGATTTGCTGGTGCTGCATACAGAGACCAAATCTAAGCTGAATAATGACATGACTCACTGAGTAATATGTGGGCCTTTTCAGGTCAGGGGCATTGGTAACTCACTTTTATACAGTCAATCTTACTTTTGGTAAGTTGTTGGTActgaaaatattttatattttttcacTCTGATTTCACGATGATGCCTGTGGAAAATAAACGATCTCACTGAAATGCA
>XM_036936511.1
ttataagcgcgaaTCCGCGTTTAATAACCCCATATACCTATAAACCCTTATACTGTTCGTATAAGGAAATATGTTCAACTCGGTTGCCATTTCAGACGAGCACGCACACGGTGGGAAATAAGCGGCATGCACGCGCAAACTGTCTAGACTGGAGTTGGCTGCTCCCCGCGCGGGACAAGTCTTACACTGGTCGCTGGAATCCTTGTCTTCTGTTTTATACAGGAATATTGAATGAAAAATATCCACAGCATGATAAGGCCAACTTAGCAGTAGCCATGCTTACATGTATTTAGACGGATAAATTCACATTTTATGAAGGAAGTGGACTCTTCTATACAGACAGTAGATTGCAGAGTCTGTCAGATGGTGAATAACCAGAGTGAGGTGAGCAGCTGGGAGCCCTGATGCCTGCTCTCCCTATTTGTGTCCAGAggtgactgaaggagggaggCATGTCTCTGCGGGAGTCCCCATTCCCCAACAGCTTTGTGGAGGGCCTCCATGCAGTGAGCTGGGGTCTCATCCTGCCCTGCTTCTGGTTCCTTGACCGCCTCATTGCCATCTGCATGTCCACCAGCCTGGAACGCACCCAGCGGCACGAGCAGGAGTGTTACCTCCACCCTCTCAAGGTGTTCTTCGGCTTCATCCTCTTCCTCGCCCTCTTCCTGTTCACGGCTCCCCTGGCATTCCTGGGGTTCCTGTTTTGGGCTCCCCTCCAGGCTGCCCGAAGGCCCTTCTCCTACCACCACGAGCCCCTGTCGAGGCCAGCACCAgctgaggagggggagaggaaccTGGGCTTTGAGGCAGGGGCCAACAAGGCCACTTTTGGTTTTGCTACTGCCAACCTGTGCCTATTGCCGGACGGCATCGCACGCTTCAACAACCTGGGGCACACGCAGCGCCGTGCCACCGCCATCGGCCGGAGCATCGTGCAGGGCGTGAACCGGCCACACATCCGCATCTTCGTGGACTCTCCCAGTAGCTGTGGCACCCTCAGCCCCTCCAGTAGCCTGCTCCCCGGCCCCTCCACCACCAGCCCTGCCTCATACGGCGCTACAGACCCAGCCTGCCAGCCACCACCCCAGGCTCATTCAGACGAGGACCAAGCTGACGGAGCGGTCCCAACAACGACACCCCCCAAACCCAGTGACTCAAACTATGTGGTGTACGTGCCCTGTGACGACACTGAGGAGTCTTCCCATTCTCCCGCCCCCGTCATCAACACCAACCACAACTCCAACCAGCAGGACCGGAAGGGCCACAGGAACCCTCCGCGGGCCCTACGCACTCAGGGGGTCGCCCAGCGCGGTCAGGCTGGGCCAGACGACGTGCCCTGGGAGGTGTCTTCTCTCTTCCCGGCCAACGTGGACATCCTGTGTCTGGAGGAGGTGTTTGATAAGAGGGCAGCTGTGAAGCTGACCAACACCCTGGGGCCCCTGTTCaaccacatactgtatgatgtagggGTGTACGCCTGCCAGCCTCCCGGCAGCTGCTCCTCCTTTAAGTTCTTCAACAGCGGCCTGTTCCTGGCCAGCCGTTACCCAGTGCTGGAGGCCCAGTACCACTGCTTCCCTAACGCCCGGGGGGAGGATGCCCTGGCTGCTAAAGGCCTGCTCTCTGCCAAGGTGCTAGTTGGCCAGAATCAGAAAGAGAAGAAGCTGGTTGGATATTTTAACTGCACACACCTCCATGCACCTGAAGGTGAAGGGGAGATCCGCTGTGAGCAGCTCAACATGCTCACCAAGTGGATCCAGGAGTTCCAGGTGACCAATAGCAAGCCTGATGAGGTGGTCGTGTTTGACGTGCTTTCTGGGGATTTCAACTTCGACAACTGCTCACCTGATGACAGTCTAGAACAGAAGCACAGTCTGTTTGAGGAGTACAGAGACCCCTGCAGGGCCGGGCCGGGCCAGGAGAAGCCCTGGGTCATTGGCACTTTGCTTGAACAGCCTACTCTGTATCATGAGGATGTAAGGACCCCAGAGAATCTTCAAAGgaccctggagagagaggagttgaggaaACAGTACATCTCCTCTCCTGTGGCCCTGGAAGGCTGTCCCATGGTCTACCCTGAGTTGGGTCAGCCTTGGGTGGGGCGCCGCATCGACTACATCCTCTACAGAGAGAGCTCCATCTCCAAGCACTGCCGAACTGAAATTGAGGAGTTCACCTTTGTGACCCAGCTTGCTGGCCTCACCGACCACATTCCAGTGGGCCTGAGGCTCAATGTGTTCCTGGACTCAGACACTGCCCAGTCCGAATGAGTGACAACCCAAGCCTGAATCCATTTGGGGAGAAGGGAAATATATGTATTtcattccaaatggcacactattccctatatagtgcactacttttgaccaaagtcctattggtgccatttgggatgcaggcatcTACTatgcaccacacacaccacacgggTACAACAATTACAAAGTAAACAGACCaatgaaaaatgccaaggggttaTGTTGGGGGTGAGCTGGCCTGTATCCTCAGTCAGAGAGATGGAAcgggcatcccaaatggcaccctattccctatctagagATGGTAAGGCatcccaaatgactccctatatagtgcactacatttgtcagagccctatggggaatacgGTACAGTTTTGGACAATACCATTGTCTGGTGGCTGCTGGATTAAAACCGATATTGATTTGCTGGTGCTGCATACAGAGACCAAATCTAAGCTGAATAATGACATGACTCACTGAGTAATATGTGGGCCTTTTCAGGTCAGGGGCATTGGTAACTCACTTTTATACAGTCAATCTTACTTTTGGTAAGTTGTTGGTActgaaaatattttatattttttcacTCTGATTTCACGATGATGCCTGTGGAAAATAAACGATCTCACTGAAATGCA

Function

NR:

description
sphingomyelin phosphodiesterase 5-like

GO: NA

KEGG:

id description
K12352 SMPD3; sphingomyelin phosphodiesterase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936521.1 False 2819 mRNA 0.54 8 6897498 6908200
XM_036936518.1 False 2900 mRNA 0.54 8 6897502 6908200
XM_036936511.1 True 2902 mRNA 0.54 8 6897503 6908200

Neighbor

gene id symbol gene type direction distance location
LOC118937417 LOC106592634 coding upstream 1211 6891448 ~ 6896287 (+)
grinab grina coding upstream 7785 6875987 ~ 6889713 (+)
rbm24b LOC106596654 coding upstream 30898 6855864 ~ 6868976 (+)
LOC110506079 NA coding upstream 55405 6841032 ~ 6842093 (+)
kif13a kif13a coding upstream 58034 6688891 ~ 6839464 (+)
malsu1 malsu1 coding downstream 311 6908511 ~ 6911256 (+)
stk31 LOC106595692 coding downstream 3889 6912089 ~ 6938750 (+)
LOC110535156 LOC106606167 coding downstream 33265 6941465 ~ 6944043 (+)
mpp6a LOC106594438 coding downstream 36065 6944265 ~ 6994715 (+)
LOC110535127 LOC106592104 coding downstream 122425 7030625 ~ 7078975 (+)
G109738 NA non-coding upstream 828 6896423 ~ 6896670 (+)
G109092 NA non-coding upstream 17942 6879274 ~ 6879556 (+)
G109088 NA non-coding upstream 25771 6871511 ~ 6871727 (+)
G109069 NA non-coding upstream 26553 6869600 ~ 6870945 (+)
G109085 NA non-coding upstream 33195 6864063 ~ 6864303 (+)
G109748 NA non-coding downstream 20505 6928705 ~ 6929195 (+)
G109757 NA non-coding downstream 60841 6969041 ~ 6969918 (+)
G109758 NA non-coding downstream 63586 6971786 ~ 6972075 (+)
G109764 LOC106592104 non-coding downstream 89017 6997217 ~ 7090223 (+)
G109772 NA non-coding downstream 90678 6998878 ~ 6999180 (+)
G109020 NA other upstream 263585 6633078 ~ 6633913 (+)
G108874 LOC106573552 other upstream 611558 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 698157 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 839163 6056996 ~ 6058335 (+)
G109821 NA other downstream 227047 7135247 ~ 7140979 (+)
pde11al LOC106573285 other downstream 394828 7282430 ~ 7304709 (+)
creb5b LOC106573409 other downstream 707759 7615910 ~ 7706660 (+)

Expression


Co-expression Network