LOC110485466 (LOC106605529)


Basic Information

Item Value
gene id LOC110485466
gene name LOC106605529
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27288172 ~ 27303644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556549.2
TTGAAATGATGGCTGAATGGAACTAGAAAAAGGAAAAGGGAAACATCTATTGTAACATTTACCACAAGTCCGACTGTCACACATCACTTCATTAACACAGTGAAGTTACATTCGATACATTGTCTTCGAATATGAGAAAATGTATGTCGTCCTTTGTCGAGCGCCACAACAATAGTGACACTGTGGAAGTTGATGAGCTGTACTATCCTGGCAGTCAGAACCATGAAGAGTCCCAGTGTCACCCTATGGCCGTGGGAGACATGGAGGCGGTGGAGGCTCTTATGTTTATGAACACCCACTGGAAAGCCAGGACTTCCAGGAGCTTCAAGCATAGACAGTTCCGACCTCTGACCCCTTCCCCTGACTTCTCAGAGGATGACTCTCATCTCTCATTTGACCCGGCTGAGGTTTGTGAGTCTCTGtgtaTGACCCCGCCATACAGCCCGCCAAACTTTGAGGCCATTCACAGTCATCCTGCTCCAGAGACAGTACAGACCTCCTGGTGCCAGAGACATAACCCACAGCCAGCACAGCAAGGCTTGACACAGCCACAGATGGTCAGCCAGCCCCGATCACAGGCCACCAGTGTGATCCGTCACACTGCAGACGCACAACACTGCAGCTGGAGCATCTGTCCAGCCGCCCCCCTGGAGCAGAGACTAAACCAACCCCtgcctccccagccccagccaagCCCAGACAGCATCAACAACCCCCTGGCAGATAGGCTATCTGGCAGGGGCTCCAAAGGGAACATGACACCCCTTGACTCCTCTGCTGAACCGGCTGCCATCCAGGCTCCGGTTACTGTAACTCTGCCAGCCTCTGTTGGTAAATTCCACCAACCTACATCGGTGTCCCCTGTCAACTGTAGGGTTTCTCCTGTTCCGGTTTATTGCCAGATACTACCTGTTGTGCCAATTGCAACGAACAGTCATATTCCAATGGTTACCACCACCATGGTGGCGGCAACCAGTCACCAACAACAGTCAGCAGCAGTTGGTCCTCCTTCATTCTTCTTCATGGGTGACCAGGTGACAAAGGGCCCTATCATCTTCTTGGTTCCCCGGCCAGTTGTCGGGATCCAGCCGTCAGTGCTGACATCTGGTGGCACCAAGCTGCCAGCCATCGCCCCAGCGCCAGGCTTCACCTCAGTGGTCCAGCGGAGCAGCCTGCAGCCTGCTGAGGTGTCCAGAGTCCGCAGCCATATCTGCCCCCACGAGGACTGTGGCAAGACCTACTTTAAGAGCTCCCACCTCAAGGCTCACATGAGGACTCACACAGGTGAGAAACCTTTCAAATGCAGGTGGGACGGCTGTGAGAGACGCTTCGCTCGATCCGATGAGCTATCACGCCACCGTAGAACCCACACGGGAGAGAAGCGTTTCGCCTGCCCCATGTGCCACAGCCGTTTCATGCGTAGCGACCACCTGGCCAAGCACGCCCGTCGACACCTGGCCACCAAGAAGGTGCCCTGTTGGCAGATGGGAGTCTGTCACAGCGGTGATGTTACACATGCAGTGTTTTCCGCACCGTTCCTTCGTCCTCTGCCCAGAATAAACTCTTGCCTCAAAGACACTGTAGAATAAGCTATTTCGTCATTAGATGGGAACTCATTCACTGTGATACTGTTCACTGAAGACTTCAATGCACATCAATGCAATTAATTACATGTTGAATTCTTTAAAAACTAAAGTTGTTTGACATGTTTAAAGTTTCTTGACTTACAGTTTCATATTTCATTCAGGTCCACTTGAGATTACGTTGTTATTGGCAGTTTAATGTGTGATGAATGATAGCAGGGTTTTTACTCATTTACATTACGTTTGATCAACTCTTACTTGTTGAAGATTATGCTAATATTATTGTTTACAACTGTGCTTTAAACTACTGACAAGACAAGATCAACCTCTTTGCATGTGGTTGTAGTGGTGGCAACTGTCCGATCTTTCTGTGGCAACCTCCAAAGTGTGGAGCAAGGTACAGAAATGTAGAAGTCAAATCTGTGAACAACTAGAGGCTTAGATAGACTCTTTCTGAATCTCTGAGCCTACCAAATAAGTCAATAACCGTTATGGATTGCAAAACTATGCTTAACTATTAGATCTTGTACATTAATTGTTTTTCTACCTAGTGAATGTGTTCAATACACTGTATATTTAATATTCATGAGAATTGTTTGGCCAAAGAAAGAATGTTATAGAAAAGTTTGTATATTTAACTTGACTAAATTACATAaattttcattgttttgttacaggtgaaataaaatgtgtaA
>XM_021556555.2
TTGAAATGATGGCTGAATGGAACTAGAAAAAGGAAAAGGGAAACATCTATTGTAACATTTACCACAAGTCCGACTGTCACACATCACTTCATTAACACAGTGAAGTTACATTCGATACATTGTCTTCGAATATGAGAAAATGTATGTCGTCCTTTGTCGAGCGCCACAACAATAGTGACACTGTGGAAGTTGATGAGCTGTACTATCCTGGCAGTCAGAACCATGAAGAGTCCCAGTGTCACCCTATGGCCGTGGGAGACATGGAGGCGGTGGAGGCTCTTATGTTTATGAACACCCACTGGAAAGCCAGGACTTCCAGGAGCTTCAAGCATAGACAGTTCCGACCTCTGACCCCTTCCCCTGACTTCTCAGAGGATGACTCTCATCTCTCATTTGACCCGGCTGAGtgtaTGACCCCGCCATACAGCCCGCCAAACTTTGAGGCCATTCACAGTCATCCTGCTCCAGAGACAGTACAGACCTCCTGGTGCCAGAGACATAACCCACAGCCAGCACAGCAAGGCTTGACACAGCCACAGATGGTCAGCCAGCCCCGATCACAGGCCACCAGTGTGATCCGTCACACTGCAGACGCACAACACTGCAGCTGGAGCATCTGTCCAGCCGCCCCCCTGGAGCAGAGACTAAACCAACCCCtgcctccccagccccagccaagCCCAGACAGCATCAACAACCCCCTGGCAGATAGGCTATCTGGCAGGGGCTCCAAAGGGAACATGACACCCCTTGACTCCTCTGCTGAACCGGCTGCCATCCAGGCTCCGGTTACTGTAACTCTGCCAGCCTCTGTTGGTAAATTCCACCAACCTACATCGGTGTCCCCTGTCAACTGTAGGGTTTCTCCTGTTCCGGTTTATTGCCAGATACTACCTGTTGTGCCAATTGCAACGAACAGTCATATTCCAATGGTTACCACCACCATGGTGGCGGCAACCAGTCACCAACAACAGTCAGCAGCAGTTGGTCCTCCTTCATTCTTCTTCATGGGTGACCAGGTGACAAAGGGCCCTATCATCTTCTTGGTTCCCCGGCCAGTTGTCGGGATCCAGCCGTCAGTGCTGACATCTGGTGGCACCAAGCTGCCAGCCATCGCCCCAGCGCCAGGCTTCACCTCAGTGGTCCAGCGGAGCAGCCTGCAGCCTGCTGAGGTGTCCAGAGTCCGCAGCCATATCTGCCCCCACGAGGACTGTGGCAAGACCTACTTTAAGAGCTCCCACCTCAAGGCTCACATGAGGACTCACACAGGTGAGAAACCTTTCAAATGCAGGTGGGACGGCTGTGAGAGACGCTTCGCTCGATCCGATGAGCTATCACGCCACCGTAGAACCCACACGGGAGAGAAGCGTTTCGCCTGCCCCATGTGCCACAGCCGTTTCATGCGTAGCGACCACCTGGCCAAGCACGCCCGTCGACACCTGGCCACCAAGAAGGTGCCCTGTTGGCAGATGGGAGTCTGTCACAGCGGTGATGTTACACATGCAGTGTTTTCCGCACCGTTCCTTCGTCCTCTGCCCAGAATAAACTCTTGCCTCAAAGACACTGTAGAATAAGCTATTTCGTCATTAGATGGGAACTCATTCACTGTGATACTGTTCACTGAAGACTTCAATGCACATCAATGCAATTAATTACATGTTGAATTCTTTAAAAACTAAAGTTGTTTGACATGTTTAAAGTTTCTTGACTTACAGTTTCATATTTCATTCAGGTCCACTTGAGATTACGTTGTTATTGGCAGTTTAATGTGTGATGAATGATAGCAGGGTTTTTACTCATTTACATTACGTTTGATCAACTCTTACTTGTTGAAGATTATGCTAATATTATTGTTTACAACTGTGCTTTAAACTACTGACAAGACAAGATCAACCTCTTTGCATGTGGTTGTAGTGGTGGCAACTGTCCGATCTTTCTGTGGCAACCTCCAAAGTGTGGAGCAAGGTACAGAAATGTAGAAGTCAAATCTGTGAACAACTAGAGGCTTAGATAGACTCTTTCTGAATCTCTGAGCCTACCAAATAAGTCAATAACCGTTATGGATTGCAAAACTATGCTTAACTATTAGATCTTGTACATTAATTGTTTTTCTACCTAGTGAATGTGTTCAATACACTGTATATTTAATATTCATGAGAATTGTTTGGCCAAAGAAAGAATGTTATAGAAAAGTTTGTATATTTAACTTGACTAAATTACATAaattttcattgttttgttacaggtgaaataaaatgtgtaA
>TU147350
CAGGTGACAAAGGGCCCTATCATCTTCTTGGTTCCCCGGCCAGTTGTCGGGATCCAGCCGTCAGTGCTGACATCTGGTGGCACCAAGCTGCCAGCCATCGCCCCAGCGCCAGGCTTCACCTCAGTGGTCCAGCGGAGCAGCCTGCAGCCTGCTGAGGTGTCCAGAGTCCGCAGCCATATCTGCCCCCACGAGGACTGTGGCAAGACCTACTTTAAGAGCTCCCACCTCAAGGCTCACATGAGGACTCACACAGGTGAGAAACCTTTCAAATGCAGGTGGGACGGCTGTGAGAGACGCTTCGCTCGATCCGATGAGCTATCACGCCACCGTAGAACCCACACGGGAGAGAAGCGTTTCGCCTGCCCCATGTGCCACAGCCGTTTCATGCGTAGCGACCACCTGGCCAAGCACGCCCGTCGACACCTGGCCACCAAGAAGGTGCCCTGTTGGCAGATGGGAGTCTGTCACAGCGGTGATGTTACACATGCAGTGTTTTCCGCACCGTTCCTTCGTCCTCTGCCCAGAATAAACTCTTGCCTCAAAGACACTGTAGAATAAGCTATTTCGTCATTAGATGGGAACTCATTCACTGTGATACTGTTCACTGAAGACTTCAATGCACATCAATGCAATTAATTACATGTTGAATTCTTTAAAAACTAAAGTTGTTTGACATGTTTAAAGTTTCTTGACTTACAGTTTCATATTTCATTCAGGTCCACTTGAGATTACGTTGTTATTGGCAGTTTAATGTGTGATGAATGATAGCAGGGTTTTTACTCATTTACATTACGTTTGATCAACTCTTACTTGTTGAAGATTATGCTAATATTATTGTTTACAACTGTGCTTTAAACTACTGACAAGACAAGATCAACCTCTTTGCATGTGGTTGTAGTGGTGGCAACTGTCCGATCTTTCTGTGGCAACCTCCAAAGTGTGGAGCAAGGTACAGAAATGTAGAAGTCAAATCTGTGAACAACTAGAGGCTTAGATAGACTCTTTCTGAATCTCTGAGCCTACCAAATAAGTCAATAACCGTTATGGATTGCAAAACTATGCTTAACTATTAGATCTTGTACATTAATTGTTTTTCTACCTAGTGAATGTGTTCAATACACTGTATATTTAATATTCATGAGAATTGTTTGGCCAAAG

Function

NR:

description
Krueppel-like factor 10 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556549.2 False 2278 mRNA 0.48 4 27288172 27303644
XM_021556555.2 False 2263 mRNA 0.48 4 27288172 27303644
TU147350 True 1158 TUCP 0.46 2 27302078 27303555

Neighbor

gene id symbol gene type direction distance location
LOC110485224 rn146 coding upstream 105613 27178987 ~ 27182559 (+)
LOC110485212 LOC106605536 coding upstream 112425 27147880 ~ 27175747 (+)
LOC110485187 LOC106605537 coding upstream 353694 26917395 ~ 26934478 (+)
LOC110533712 NA coding upstream 379005 26904901 ~ 26909167 (+)
LOC110485145 LOC106579269 coding upstream 384761 26897929 ~ 26903411 (+)
LOC110485500 LOC106579140 coding downstream 17906 27321550 ~ 27331169 (+)
LOC110485507 LOC106579115 coding downstream 28053 27331697 ~ 27380409 (+)
LOC110485543 LOC106579099 coding downstream 86946 27390590 ~ 27403425 (+)
LOC110485528 LOC106605545 coding downstream 100021 27403665 ~ 27408989 (+)
LOC110485563 LOC106579093 coding downstream 106121 27409765 ~ 27419165 (+)
G127712 NA non-coding upstream 4484 27283390 ~ 27283688 (+)
G127709 NA non-coding upstream 7452 27280518 ~ 27280720 (+)
G127702 ubr5 non-coding upstream 17449 27270133 ~ 27270723 (+)
G127608 NA non-coding upstream 146662 27141213 ~ 27141510 (+)
G127571 NA non-coding upstream 175659 27112208 ~ 27112513 (+)
G127697 LOC106605528 non-coding downstream 4884 27308528 ~ 27310040 (+)
G127699 LOC106605528 non-coding downstream 6923 27310567 ~ 27312496 (+)
G127767 NA non-coding downstream 84898 27388542 ~ 27388818 (+)
G127775 NA non-coding downstream 120407 27424051 ~ 27429021 (+)
G127824 NA non-coding downstream 216343 27519987 ~ 27569509 (+)
G127644 LOC106605534 other upstream 97579 27189991 ~ 27190593 (+)
G127198 LOC106605538 other upstream 426930 26857698 ~ 26861242 (+)
G127190 cf113 other upstream 492410 26794210 ~ 26795762 (+)
G126727 LOC106581475 other upstream 659523 26626849 ~ 26628649 (+)
G128185 NA other downstream 412838 27716482 ~ 27717163 (+)
G128436 NA other downstream 785003 28088647 ~ 28089445 (+)
G128490 NA other downstream 947198 28250842 ~ 28547915 (+)
LOC110485990 LOC106579931 other downstream 1628412 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 1636255 28939899 ~ 28981288 (+)

Expression


Co-expression Network