LOC110485968 (LOC106605416)


Basic Information

Item Value
gene id LOC110485968
gene name LOC106605416
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28867302 ~ 28905546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557241.2
AGGGGGGCCACTGGGCAGATAAAAGAGCTGTGCTCGCCGCTCCTGCTGTACACCACTGCACACTGCTGCTGTGTATGaagactgaaggagaggaggacccgACCACGACTGTGCCCGACAACTTGTACAATGGACGCTGCAGAGTTccggaggagagggaaggagatggtaGACCTGATAGCAGATTACCTGGAGAATATAGAGCAAAGGCCGGTGTACCCCGACGTGGAGCCTGGGTACCTGCGGTCCCTCATCCCTGAGGAGGCCCCTGAGGAGCCCGACACCTACGAGGACGTGGTCAAAGACATTGAGAGGGTCATCATGCCTGGGGTGACCCACTGGCACAGCCCGTACTTCTATGCCTACTTCCCCACGGCTAACTCCTTCCCGGCCATGCTGGCAGACATGCTGTCTGGAGCTATTGGTTGCATCGGATTCTCCTGGGCTGCCAGTCCGGCGTGTACAGAGCTGGAGACAGTCATGATGGACTGGCTGGGGAAGATGCTCAAGCTGCCAGAGGACTTCATCGCCGGGACACACGGACAAGGAGGAGGCGTCATCCAGGGTACGGCCAGTGAGGCGACTCTGGTGGCTCTCCTAGCTGCCCGCTCCAGGGCGGTCAGAATGATCCTGGCCAGTGACCCACAGCGTCCAGAGACTGGCATTACCTCCAAACTGGTGGCCTACTCTTCCGACCAGGCTCACTGCTCGGTGGAACGAGCAGGTATGATTGCCGGAGTGAGGATGAAGAAGATTCCAACGGAGCAGTCAGACAAGTACGCTGTCCAGGGAGAGACCCTCCGGAGAATGATACAGGAAGACAAGGCTGCAGGACTCATCCCCTTCTACTTCTGTGCTACTCTTGGGACCACTCCCTCATGTGCATTTGATCACATTACTGAACTTGGGCCCATAtGTAATGCAGAGAAAATCTGGATGCACATTGATGCTGCATATGCTGGGAGTTCCTTTATTTGTCCTGAATTCAGACCCCTGTTGAACGGCATTGAGTTTGCAGACTCATTCAATTTCAACCCACACAAATGGTTGTTAGTCAACTTTGACTGCTCTACAATGTGGGTGAGGAAAAGATCTGATCTCATTGGGGCCTTCAAGATGGATCCTCTATACCTGAAACATGATCATCAAGAGTCAGGGCTGGTCACAGATTACAGGCACTGGCAGATTCCACTGGGCCGAAGGTTCCGCTCTCTCAAGATGTGGTTTGTGTTCCGGATGTATGGGCTCAAAGGCCTTCAGGACTACATCCGTAAGCATGTGGAGTTGGCCAAAGAGTTTGAGAGCCTGGTTCGAGCTGACCAGCGCTTTGAGATCAGTGCAGACGTCGTCTTGGGGCTGGTCTGCTTTAGACTAAAGGGCTCCAACGAGGTGAACGAGACCTTGCTGAAGAGGATCAACAATGGCAGGAAGATCCATCTGGTGCCGTGCCAGCTGTCTGGTCAGTTTGTGCTGCGCTTCGCTGTCTGCGCCCGCACCACCGAGTCACGTCACATCCGCGAGGCCTGGCGACTCATCACACAGCTGGCCGAAGAGGTCATGCAGGAGCTGCCCCACTGACCATCCACATTGACTAGACAGGCTGGGTTGGACCAGGAGCTGTAAGTATCAAGTATTTCAGAGTAAGAGtgcaggtctaggatcaggtcccctgtCCATTCATTAAAATATTAAATACTAAATTGATCCTAGAAGTggatcttagatcagcactcctactctgagatgcatGATGAATAAGGGCCCTAACCCCACCTGACCATGGCTGGTATTcaaaaagtgtctcagagtaggagtttccatgttgtcttatttcttgtgaAGTAAAAGGCTAAAGTGATCCTagttcagcactcctactctgagatgctatATGAATACAGGCCTGGATCTCACtcaatggaggctgctgaggggaggacggctcataataatggctgaaacggagcgactggaatgacatcaaaccatgtgtttgataccattccaccgattccgctccagtcattaacacgagcccatcctccctaATTGAGGtggcaccaacctcctgtgatctcACTGTGTTTACATCATCAGCATACTGTAACTGCAGCCCTTTCTCTTTGCTGTCTCATCCCATGTGTGTATTTATATGTGTGGTTGTATGTGAATCAGTGAATTTGTGTTGGTGAGTGTGAATAAATTAAAGGTGCGTATGTGAGTGAAGCAAATCATATCCAGATGTTAAGGTTTTGCCTGATATGTTACTGTAGTGTAGGGTTTACTGACAATACTCAAGCATGTGTTCTATGTAAAACCAGACTGACTGAGTTCTGCTTTGACTCCACACCAGTATGCTAAATGAGAGAGGCCAGGCTAGAGACGGGCACCACCCCCCTCAGGGCTCTGTGTATGCCCCACCTGCTCCTACAACCCCTctccaccctcaccctcacctACCCTGCCCTGTCCCTTCTCAACCAACTGTTCATCCAAATCACTTTAGAGAAAGGCCAGCATGCTAAAAATACAGGCAAGGACTTAGTATGTGGGGCTTTATCCTGCCTGAGGTTTATCCAGGCTCTGGTCACTCAGCTGTGTTTACCTGCTCTAGTGGAGTGATTAGTAGAGGTATTCAATTCAGTACAATATTATTTATCTCCTTAGGGGCATATTGATTAAAACATTGGGATAGTGTAGGTCCCTAAAACAAGATTGCACATTATACATGTTCACAATTCAAAACATTTAAGAGTCAGAAAACATTGTATGGTTTGGCACCATTATACAGTAAGTAGAGATAGAAACAGTTAGTATCCCACAAGGTGTGAGCTGTTCACTGTTTTCATGAAGCCAAAAAAATTAACAGCATGTTGAGATTTTGCCAAAGAGAGAAACAGGTATCTTATACCAGAGACACAGGTATCTTATACAAGAGACACAGGTATCTTATACAAGAGACACAGGTATCTTATACAAGAGACACAGGTATCTTATACAAGAGACACAGGTATCTTATACAAGAGACACAGGTATCTTATACCAGAGacacatgtatcttataccagaAAAACAGATATCTTATACCAGAAAATCAGGTATCTAATACAAGAGACACAGGTATCTTATACCAGAGACACAGGTATCTTATACCAGAGACACAGGTATCTTATACCAGATAAACAGGTAGCTTATATCAGAGTTGTGGCCATTCCcgtttcaattcagtcaattctgAAAGTAAACTAAAATTCTAATTCCAAAATGTTCTCATAGAGAAACATTGAGCAAAAATGTTTAACTCCCTAATCGACTGAATAGAaaaggaattgaccccaaccctgtttCATAAGCAGTTTTGTCCTGAACAGCATAATAACCCATGAGACAAATAAGAGCTCTTATGGGAGCATCAGTTAAAACACTTACTGTAAGCTTTTGCCCTGCAtgaataaaatatacagacaacagtTAATGTCTCAGTTGATTTGAAGAGACACAAAAACAATATGTACCTAGCTTCACTTAATGCCCTCAGCAGTAGCAGTGAGCCAAGGAGGAATTGACTTGAGAGGGTCTCTCCTTAAGAAGGTAATATGAATGTGTTTCAAAtgtgtactctactgtatgcacATCATATGATGTTTCTGTTGGGCTGTTGGATAAACAAACCAGTTGAATTAGATTAGACCTTTAAGCTGTGATTCCCAGCATGTCATGGAGTCACTCAAAATAAATGAACTAAGTAATCAAGAGATAAAATATCCCTGTCCCTGGTTTGATTCACAAGTCAAGTGTGCCTTTtgaatgagggatggaggggtgtgtgtgtgtgtagaatatGTGTAGTGGTGTCTTTTTGTCTCTTTTGTGTCTGTGTTTACTTGATATAACCAGCAGTGGGCTGACTGCTTCAGTCTCACACTGGGGGGAAATTGTATTGTTAACTTGATCATCTCTTACCTGGCGATAAGGTGGTAGTGCAATCCTATGTTTTTTGAAGGAGGAAAACCTTAAGCATAGCTGTATTCTTTTATATGCTTTGTGGCTTCCTGCTACTTATCTGCCTTGTGGCATCATTGTACTGTCCTCTTTACAcaacaaaataaatgtgtttgcgATGTG

Function

NR:

description
aromatic-L-amino-acid decarboxylase-like

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0007420 brain development biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K01593 DDC, TDC; aromatic-L-amino-acid/L-tryptophan decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557241.2 True 4125 mRNA 0.46 14 28867302 28905546

Neighbor

gene id symbol gene type direction distance location
LOC110485935 LOC106605415 coding upstream 1991 28783574 ~ 28865311 (+)
LOC110485894 LOC106605414 coding upstream 86755 28719936 ~ 28780547 (+)
LOC110485836 LOC106605411 coding upstream 179972 28537533 ~ 28687330 (+)
si:ch73-22o12.1 LOC106605406 coding upstream 397554 28399615 ~ 28469748 (+)
vars1 LOC106605401 coding upstream 511060 28338839 ~ 28356242 (+)
LOC110485980 LOC106605417 coding downstream 9275 28914821 ~ 28931101 (+)
LOC110485990 LOC106579931 coding downstream 26442 28931988 ~ 28951235 (+)
trnat-ugu-29 NA coding downstream 115873 29021419 ~ 29021491 (+)
LOC110486009 LOC106605422 coding downstream 133382 29038928 ~ 29054543 (+)
LOC110486020 LOC106605423 coding downstream 155042 29060588 ~ 29081536 (+)
G128813 NA non-coding upstream 15493 28851577 ~ 28851809 (+)
G128638 NA non-coding upstream 93720 28768219 ~ 28773582 (+)
G128760 LOC106579893 non-coding upstream 148567 28712992 ~ 28718735 (+)
G128747 NA non-coding upstream 173335 28693692 ~ 28693967 (+)
G129093 NA non-coding downstream 449926 29355472 ~ 29356526 (+)
G129099 NA non-coding downstream 461428 29366974 ~ 29367331 (+)
G129149 NA non-coding downstream 567736 29473282 ~ 29473490 (+)
G129151 NA non-coding downstream 568707 29474253 ~ 29474520 (+)
G129153 NA non-coding downstream 570226 29475772 ~ 29475990 (+)
G128490 NA other upstream 319387 28250842 ~ 28547915 (+)
G128436 NA other upstream 777857 28088647 ~ 28089445 (+)
G128185 NA other upstream 1150139 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 1563747 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 1676709 27189991 ~ 27190593 (+)
G128853 LOC106605419 other downstream 34353 28939899 ~ 28981288 (+)
LOC110534631 LOC106580029 other downstream 572071 29424822 ~ 29478401 (+)
G129155 NA other downstream 579087 29484633 ~ 29485130 (+)
G130308 NA other downstream 694480 29600026 ~ 29641096 (+)

Expression


Co-expression Network