LOC110486065


Basic Information

Item Value
gene id LOC110486065
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29164798 ~ 29171119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468027.2
aatgcaacaaaataggaaaaacatcaagggggatgaatacttttgcaaggcgctGTAACCGCTGATGATATAAATGAATGAGGAAACTAGTAGAAGATAAGTATTCagctctctccctcacacacaccaacaaggCACTCTGACAACCCACGAGATGGAGAAATTCCTACTAGTACTTGAAGTGATTACAACATGCTGTGCTGTAACTCAAAGATCAGGATTCGTTCAGCGGGCGTTCCAACCAGCATTAGTCATGTGTTGGTCTGCTGACAAATGTCCACATTTGGGACTACGTGTTGTCTCCCTGTGAGATCCAGAGGTGCATCAACCAGATGAACTTGACCACCGGCGACATGCTCAACTGGAAGGCCTTGGACAACCATTATCACTCAAACAAATAATAATCAAGTGTCTATTATGCTATCTGGTAACTTTCCATAATTGTGTAAATTGAAAAGGCCATATCACGATAGTATACCATAAGAAACTGACAATGTAACTAAACGGTGTCGGTTGCGTGAATTAGCTGTCAGTGGTTCTATCATGCTAGGATAAATATAACCTTGCTACGGCTGTAAGAGCTGCTCTAAGGCGTGAAATTAAACATTAGTGCAAAGGCAGGATGTAAGCCAGTGTTTTTCACAATGTTACTGATGTTGTTACAACTTAATACCGTCCTGAAGATATGCACTGATATCTAATTTTGTAGATCAGGATTCATtcatgcactatacacacacacacacacacacacac

Function

NR:

description
C-reactive protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468027.2 True 756 mRNA 0.41 3 29164798 29171119

Neighbor

gene id symbol gene type direction distance location
LOC110486049 stea4 coding upstream 2989 29150877 ~ 29161809 (+)
LOC110486020 LOC106605423 coding upstream 83262 29060588 ~ 29081536 (+)
LOC110486009 LOC106605422 coding upstream 110255 29038928 ~ 29054543 (+)
trnat-ugu-29 NA coding upstream 143307 29021419 ~ 29021491 (+)
LOC110485990 LOC106579931 coding upstream 213563 28931988 ~ 28951235 (+)
LOC100136336 stea4 coding downstream 979 29172098 ~ 29196640 (+)
LOC118937130 NA coding downstream 60459 29231578 ~ 29232721 (+)
LOC110486083 LOC106605428 coding downstream 198716 29369835 ~ 29418297 (+)
LOC110534631 LOC106580029 coding downstream 253703 29424822 ~ 29478401 (+)
LOC110486208 NA coding downstream 374125 29545045 ~ 29553946 (+)
LOC110485935 LOC106605415 non-coding upstream 299623 28783574 ~ 28865311 (+)
G128813 NA non-coding upstream 312989 28851577 ~ 28851809 (+)
G128638 NA non-coding upstream 391216 28768219 ~ 28773582 (+)
G128760 LOC106579893 non-coding upstream 446063 28712992 ~ 28718735 (+)
G128747 NA non-coding upstream 470831 28693692 ~ 28693967 (+)
G129093 NA non-coding downstream 184353 29355472 ~ 29356526 (+)
G129099 NA non-coding downstream 195855 29366974 ~ 29367331 (+)
G129149 NA non-coding downstream 302163 29473282 ~ 29473490 (+)
G129151 NA non-coding downstream 303134 29474253 ~ 29474520 (+)
G129153 NA non-coding downstream 304653 29475772 ~ 29475990 (+)
G128853 LOC106605419 other upstream 183510 28939899 ~ 28981288 (+)
G128490 NA other upstream 616883 28250842 ~ 28547915 (+)
G128436 NA other upstream 1075353 28088647 ~ 28089445 (+)
G128185 NA other upstream 1447635 27716482 ~ 27717163 (+)
G129155 NA other downstream 313514 29484633 ~ 29485130 (+)
G130308 NA other downstream 428907 29600026 ~ 29641096 (+)
LOC110486279 LOC106605442 other downstream 514848 29685855 ~ 29697686 (+)
G130414 NA other downstream 618457 29789576 ~ 29789831 (+)

Expression


Co-expression Network