LOC110486525 (LOC106605463)


Basic Information

Item Value
gene id LOC110486525
gene name LOC106605463
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30234520 ~ 30249314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558196.2
tggtggcttcaacacagcgcccctatcagtcatctagtgttcGTGTATGTGATCATCTGACCAAAAGTCAGAgacaccactatgatgacacaccaaatgtgtttgatggatccttttgGTCTTCTTCTAATGTCTCTTAAtggtaatctaaaagtaactgaaagtagcCTAATTAGATTaagttactgagtttgggtaatcaaAAATTACGTTATTGATTACAATGTTGGACAGGTAACAAGtaactaacggattacatttagaaagttccCTACCCAACCTTGCCTTTAGGGTACTTTTTTTAAACCACATCACACAATAGGCTACATCTCCAGTGTACTGTGCAGTAGGCCTATTTGCAAATTGCACGCAACATATCCAAGAAATTGGATTGTACTAGACTAATCAGTGGATTGATTCAGGGCCACAACAGGCACCTTTTATAGTCTACAGGAATATTGATGTGGTTTCAAAAATGTAAAAGTATGCGAGGGCTTGCCATGGTGTATGTCGCGTATCTCTAGCTCCCCTGTAGGCTTGGGTAACCAAAGAGCATTGAAATAAAGGGAGCCGTCGAACTAGTCTGGCTACTACTCTCTCCCCGGTACGGAAACCGGTTGCTGTCAGAATACGGCACAACCTAATTATTTAATTTCAAGGGAGACAAATTTACTTTAAATTCGGGAGTTCGTAAAGCCTACTACACAGGTGAAGAAGTAGAAAGTTGTGACACGACCAACCTCACATCAGAGCGGCGCCCGAGATTATCGTGAATTTATTTGGAGTGCAGTAGCTCTGGAAAACAACCAGAAAAATAGtgtgaggagggggaagagggaaaaaGAACAAGACCATGGCTCTGATTAAGCTGCAGAATGTGGAGGACTACTATGAGATTGGAGAGGTGCTTGGCAGtGGTCACTTTGGGCAAGTGCGTGCGGTGCTGGAGCGGGCGTCCAAGGTCCACTGGGCGGGGAAGTTCCTGAAGCTGCGTCGGAGCGCCAGTAGCCGCCTGGGCCTGGAGAGGAAGAGtgtggagaaggaggtggagatACTGCAGAGCCTGCAGCACGCCAACGTCATGGCCCTCAGGGATGTGTTTGAGAGTCGCGCCGAGGTGGTGCTCATCGTGGAGCTtATCAGTGGTGGGGAGCTGTTTGATTTCatagcagagaaggagagcctGTCTGAGGAGGAGGCCATAGAGTTCTTGAAGCAGATCCTCATGGGAGTGGGCTTTATGCACACTAAGAACATTGCCCACTTTGACCTCAAGCCAGAGAACATCATGCTGGCTGACAAGACGATGCCACACTCCCACATCAAGATCATTGACTTTGGACTGGCCCATCGCCTCAAACAGGGGGAGGAGTACAGGAGCCTATCTGGAACCCCACAGTACATCGCCCCTGAGGTGATTAACTACGAACCCCTGAGCGAGGCAGCCGACATTtggaGTATTGGTGTGATAACCTACATATTGTTGAGTGGTTTGTCCCCCTTTCAAGGAGATAATGACGAGGAGACACTAAAGAATATCGTGGGGATGATCTATGAGTTTGAAGAGAACTATTTCACCCAGACCAGCGCCATGGCCAAAGACTTCATTGAGAAACTGCTGGTCAAAGACCCAATagagagaatgacagcgGATGAATGTCTAGTACACCCTTGGATCAAGCCCCTCACACGCAAACAGGTGGATAACAGAAGTCGATCGTCCATCAACATGAAAAGCTTCAAGAAGTTCAACGCCAAAAGGAAATGGAAGATGTCATATAACATGGTGTGGGCGTGTAACAGATTATTTCGCCTGCAGTTGCAGTGTAAAAGCAGGTCCCAGGTGGACCCAGAACTGAGGCAGTGTGAGAGCGACCAGGAGGACACGGAGACCAAGCCTGCTTCTCTCATTCGCCGCAGACTCAGCAGCAGTTCCTAAAGAAGACCACTGGGGTCACTAACACAGCCTCAGACCACCACTATCCATCCCACCATGGGGAAACGGAGAGAAGCCTTTTGTGAGTGCACCAGTCAACAATAGTCTGAGTTACAGAATGACTGACTATGCCAGTGACAATACGAGTAACGAACCCGTGATGTGCAGGTGCCTAAAGCCAGTGTTAGTCCACAGAGTTGAATCTTAATGTCTCAGACACGGTTCCTGATCAAACCACTGTAGTTTACCAAACTGCTTCTGTTACACTTCACCCCCATTTGACCTAGCATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTATGTATTTGCCTGTGCCTTTTATGCATTTGCCTGTGCCTTTTAAGTTTGACACATTTATTTTCTGAAAATGCCAAAACTTTTGTTTTGGTGCACGGGATAGAGTTTGTCACACTTATAGCTAACCTCGGTTGCAATTATTATGCCTTACAATATTATGTGGTTATTATTTAGCCTCCGCCACATGTTCCGATATTTTTGACTGCTGTATGCCTGTCAAAGGTCAAGACTATTCCAAACTCATTTTTATTTGAGTTTGAGACATTTGCATTTCATACAATTAACTAGAAAAAGTACTTGGTAACTCAAATGTTAATTGAGTGTTTCACATGAAATTAGGGAACTATACAAGCCATACAATTGGAAATAGAAGGCCTGTTTTTCTAATTCTGCCTTTAAGTGGATACATCATTTGTGTCAGAATGTAGATATAAGTTTATACagagctactgtactgtacacagcTACAGCCGTGTTTGATAGTGTTTGGCACTGACATGTAATGTAGTcttagtgtgtagggcccttaaAAGCCTTATCAAACTTCATCTTCAATATACTTTATTGAACATTTCAACTATCTTTGGCTTATGTCAAAGGTCAATTTTATAGTCGTTTTTGAAAGGGAAAGCTACTTTATGTGGTGTAGGCTTTTTTTATATGTAATAATGAGAGTTTAATACTGACAACAACCATGTTTTGTGAATTGTGTGATGGTGAATAAGAAAATGTTAGTCTATGATGTTAAAGctattacagtatatacacatttgTTACTTTGAAAGCACACAATTTTTTAAAGACAGCAGACTACTTGCACTGGTTGAGTTATCAGTTTCTGTGGCACATGATGAGGTCAAGATAGTCAGTGAACTGCAACCTGTATCTAACTTGACCACTGCGAACCTATCACAATTATTGTAAAAGTTCATTGTAACAGACAAATGGATTAGAAGAAGTGAGGCCTACAAACTTCAGTCTTTCAGTTatttttctaaatgttctaaatTGGTTCCAGGCTGTCAACCTCATATTCTTATGGAAGCGTGAGGAATTGTTGCCATTTTCCTCTGGGTTTATACAAGGGTATAGAGGTTTTGAAACGGGGTTGAGTAGTTGGCCCTTCCAAGATGAGCAGGATCCAAGGAGTCAGCAGCATTCTTGGAGAGATTGGGCCAAGGAAATAAAGAGCTTTCACACACTGTAAATTCCTGAATCTGCCCATGCCCTCTCTCCTTCCAATGTGCATCCTACAGAGCACATGCCCGTTGCCATAGAGGATTCACAAACAGACGCACTCGAGCATGCAAGAGAGGTGAGTTTGGAATTAGGCAACCATTAAAATTAACGGTGCATAATATAATAAGTGTTCAAGGTGTTCAGTATATTTGTAATTCGCACGCATgaacacccacacatacagtacataaaggTGAGAGGAGATGCGTAAACAGCCATGTCTAGCGAAACTGAGTAACAGGCTACAACACTTACGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558196.2 True 4471 mRNA 0.43 12 30234520 30249314

Neighbor

gene id symbol gene type direction distance location
LOC110486492 LOC100194668 coding upstream 19693 30210483 ~ 30214827 (+)
LOC118944173 NA coding upstream 20107 30214278 ~ 30214413 (+)
LOC110534650 LOC106580339 coding upstream 24723 30205700 ~ 30209797 (+)
gon4l LOC106605460 coding upstream 28966 30179985 ~ 30205554 (+)
LOC110486473 LOC106605459 coding upstream 65909 30115535 ~ 30168611 (+)
LOC110486531 LOC106605464 coding downstream 12159 30261473 ~ 30311269 (+)
LOC110486559 LOC106605466 coding downstream 65271 30314585 ~ 30321121 (+)
LOC110486570 LOC106580396 coding downstream 77176 30326490 ~ 30349970 (+)
decr1 decr1 coding downstream 103454 30352768 ~ 30359695 (+)
LOC110534660 LOC106605472 coding downstream 236058 30485372 ~ 30505119 (+)
G130907 NA non-coding upstream 3839 30230438 ~ 30230681 (+)
G130906 NA non-coding upstream 4782 30229415 ~ 30229738 (+)
G130879 NA non-coding upstream 77680 30155296 ~ 30156840 (+)
G130773 NA non-coding upstream 240380 29993917 ~ 29994140 (+)
G130921 NA non-coding downstream 5169 30254483 ~ 30254722 (+)
G130793 NA non-coding downstream 63933 30313247 ~ 30313950 (+)
G130950 NA non-coding downstream 76618 30325932 ~ 30326157 (+)
G130947 NA non-coding downstream 115066 30364380 ~ 30364733 (+)
G130799 NA non-coding downstream 144875 30394189 ~ 30397680 (+)
G130414 NA other upstream 444689 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 540669 29685855 ~ 29697686 (+)
G130308 NA other upstream 593424 29600026 ~ 29641096 (+)
G129155 NA other upstream 749390 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 756390 29424822 ~ 29478401 (+)
G131491 NA other downstream 450868 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 498741 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1042156 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1111122 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1608334 31834170 ~ 31887572 (+)

Expression


Co-expression Network