XLOC_020674 (arl8a)


Basic Information

Item Value
gene id XLOC_020674
gene name arl8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 710759 ~ 718615 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040881
GCTGTGCGTGGATGTGAAACCCCACCCAATGAGGAAGGACGAGCCGtgagagcagcagcagcaggagccCGCAGACCCGAGCCGACCGACCGCACCATGATCGCGctattcaacaagctgctggactGGTTCAAGGCGCTCTTCTGGAAAGAGGAGATGGAGCTGACGCTGGTCGGCCTGCAGTACTCCGGGAAAACCACCTTCGTCAACGTGATCGCGTCTGGTCAGTTCAGTGAGGACATGATCCCCACCGTCGGCTTCAACATGCGCAAGATCACCAAAGGAAACGTCACCATCAAGTTGTGGGATATCGGTGGTCAGCCGCGCTTCAGGAGTATGTGGGAGCGTTACTGTCGTGGCGTCAGCGCTATAGTGTACATGGTGGACGCAGCAGATCCAGAGAAGATCGAGGCATCGAAGAACGAGCTGCACAACCTGCTGGACAAACCACAGCTACAGGGCATCCCGgTGCTGGTCCTCGGCAACAAAAGAGATCTTCCCGGAGCTCTAGATGAGAAAGAGCTCATTGAGAGAATGAATCTGTCGGCCATCCAGGACAGAGAGATCTGCTGTTACTCTATCTCCTGTAAAGAGAAGGACAACATCGacATCACACTACAGTGGCTGATCCAGCACTCGCGGACCCGGCGGAGCTGAGGGCGAGGCGTCTGATTGGAGGAGCTGCGTCATGTGATCAGCTGTATTCCATTATAAACAAACGAGCATCCGCCCCTCCCCCTCTGTTCTGATAAACTAATCAACATCATGTCCATCgtttgatttttcagtttttacttGAATGTGCTTTTTTACGGTTCGTCATGACGTGTTTGGTCTCCTCGCGTGCGGCGTTCTGCATGTTTGGGAACGAACCAGCGCTCGGCAGTACGTTCGCGCCAACCTTGTTGTTTTAATGTTATTCCAGCGTTCCCAGAACATTCCCAGAGAATCTGCTGATTGTACGCATTTAACGAGATGGTGAATCTTAGCATCGTTAGCTTATGTGTGCGATCTGGCGATTATAACATCACACTGTTAGCCAAGGTCACATGGTGTGCGTAAAATCTTGTAGCATAACAAAATCTGTCGTTTTATCGGAAAGCACACGAATCAGTCCGAATGAAGGTTTTATATGTTTTCTTTGTGTCGCCGTTGCGTGCAGAACAACATCAGTGTTTAGACGATTCTTTGATCCCCGATTGTTCGTGAAACCATATCAGACGGCAAACGCTGATCTGTTTCTGTTCGTTGCGCTAATAAAACCGAATATCGTGCGAATCTCTTGGTTCCGAACGCTGTTCATATCGGGGAGAAATGAAGATCTTGCCATTGTTTTTTCCGCTTTAATTTTGTTTACAGCTTGTTTCGTTTTTGTCGCACATGTGGACGTTTTTGGCCTAAATCATAACGATTTATAAACACGTCAGTAGTTTATACATATGTAAATTGACAtattttttcattctttatttgtttttggcatgtttttactcatgtttttcagtgtttttcaacTGGATTATGTAAATAGCAACTTAAACCAAATGAGATCTCCCCTCTGAGCATTACAGTGTTTGTCTTATTGTGATTAGCATCCtacgataataataattataataataataacaataatgatattgAAGAAGACTCCACTCATATTCACAGCAATCTGAATGAGCGGATTGTGTGTGTGAGCGATTGTGTATGTGCGCGCGAATGCCGTGATGTAGACTTGAATAATATTTACGTTATAAATGCCGCAGGTTTTTTCTGTTGATTTTGCGCAACTGCTAATCATTTTGTATTCATCTGCACTAATAATTTGATTTTCTGCGTACCATGAGTTCATAATCTAGATGAGTTAGAACACACAAGACGACAAATCGGCATGGCTAAGCTTAAAAGTGGATGTAGCAAATTCATGTTACGACCCACGTTACAATggtagttatttttattaaaactgctaaCATTTTAGCATTATTGTCGTTGAAAAGCGACAACATAGGCATTTACGAAGTCAACGAAATTGATGTAAAACAAAATTCGAAGTTAGCCAAGTGAAGTTTGTAATTCGTTACAAATTCGTTATCATCATAAATtgctttaaatgtaataaaatttataaatttgttgatttataacaatgtaattaattAAGTCATATTCATGGCATGCAACTTTGTTACATTGTTAGTTTCTAAGTGCCCTTTATGTcataaaatgatacatttttaaattatagttGGCCGACTGTCATTTTGTCGTGTTGCGCAAGTCGATTTGACACTAATTGCAGAACACTAGATTTTCTGCTCTCATTCATCGTGACTTAAGCTCATCTGGCCTCTCGTGACATCAGTATgtgtttatttgaatatttttgtgtGTACTTAAATGTGgccaaaagtttttttgttttgatatgtTGGGATTCCACACTGGTTTCCCGTTGCATGGCTCATTATGGGATGGAGCAGGTTGCCATAGTTACTGTATAATCAGAGTGTGATTGGACTGAGCTCAATGACGTTTTTTTTTGCTCCTGTTTATATATGGACCCCACAGTACCTTTTTAAAGCAGTCACATAACTACAGTTTCTGTACAAGACTCGATCACTTGAGTTTTACATTCGGGATCTTTCTATTCTCTCGTACTCGCGGTGATAACTGTACATGTTGTTCTTGTTATTTacagattatttaaaaatgaaattaaatgatttcCCTCTCA

Function

symbol description
arl8a Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within protein transport. Predicted to be located in late endosome membrane and lysosome. Predicted to be active in lysosomal membrane. Orthologous to human ARL8A (ADP ribosylation factor like GTPase 8A).

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0005774 vacuolar membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5025 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within protein transport. Predicted to be located in late endosome membrane and lysosome. Predicted to be active in lysosomal membrane. Orthologous to human ARL8A (ADP ribosylation factor like GTPase 8A).

Ensembl:

ensembl_id ENSDARG00000078686

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040881 True 2734 mRNA 0.42 7 710759 718615

Neighbor

gene id symbol gene type direction distance location
XLOC_020673 NA coding downstream 5852 700213 ~ 704907 (-)
XLOC_020672 NA coding downstream 13255 659917 ~ 697504 (-)
XLOC_020671 apobec2a coding downstream 59040 641342 ~ 651719 (-)
XLOC_020670 srsf3b coding downstream 87792 613265 ~ 622967 (-)
XLOC_020669 cdkn1a coding downstream 102947 603382 ~ 607812 (-)
XLOC_020675 NA coding upstream 14629 733244 ~ 735244 (-)
XLOC_020676 NA coding upstream 20685 739300 ~ 760886 (-)
XLOC_020677 rbbp5 coding upstream 51386 770001 ~ 784110 (-)
XLOC_020678 TMEM263 coding upstream 94233 812848 ~ 817479 (-)
XLOC_020679 cry4 coding upstream 101041 819656 ~ 834106 (-)
XLOC_020664 NA non-coding downstream 314859 392619 ~ 395900 (-)
XLOC_020657 NA non-coding downstream 395379 313710 ~ 315380 (-)
XLOC_020646 NA non-coding downstream 609312 101082 ~ 101447 (-)
XLOC_020684 NA non-coding upstream 299730 1018345 ~ 1023531 (-)
XLOC_020686 NA non-coding upstream 437815 1156430 ~ 1168291 (-)
XLOC_020687 NA non-coding upstream 463469 1182084 ~ 1182479 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01084490_00001194_00003621 ARL8B, ARL8A coding CI01084490 null 1194 ~ 3621 (+)
bowfin (Amia calva) AMCG00014007 arl8a,LOC107671521,LOC107569762,LOC105900530,LOC107750681,LOC107722853 coding CM030125.1 CM030125.1 49456627 ~ 49463170 (-)