si:dkey-234i14.6 (LOC106561240)


Basic Information

Item Value
gene id si:dkey-234i14.6
gene name LOC106561240
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76321757 ~ 76341834 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572453.2
GTTGCAACAGGTCACATAGAGGGCTGGAAGCAATGTGGCCACTGGCCAGATGGACAAAATTAATGGGATGCATATTTGACTTTGAAAATAGCctacacattcactcacagtcaAAGTCAATTAGACCCTATTCAAACGGATTAATTGTTTTACACTCGGGGGAAACTGGACTCTTTTGAGTTTATGCCCTCTGAACTTGTTGCAGGACCTGATTGTGACCACAGGGCAGGACGCCCGGCGCTCGTTAACGTGTAATTGCTACACTTAACCGCGGCTGGAGATAGACGGTAAAGCGATACAGTATCGCTTTTTCGGTCAATTATTTTGTTTTATGGTTTTGAAATACATCGCAACTGATGTAATAATTTATTCACAACAGTGTCATGCCTGGGACGTCTAGCCAACTGTGACTTTACTTgcgggagaagagaagagaatgtgTGTTTGGTCGCAGCTGGTCTCGTTGAGTAGATGGGTCTGTGTGGAGAGACGCTGCGTTTCTCTCTCTGCTGGAGAGTACTGACCAAGGCGACAGTAACGTGACTGTGCGCATGTAAGAAAGCTATCTCTACCTCCAACAAGTCTAAGTGATAAATGCTCATATCTAGCCACAGCATGGACGGGCTGCCGACGGAGAGCACCGGACTCAACAGCATCAACAAGGAGAAAACAGATGAACAGTACCGGGCTCTAGCCTACGACACCGCGCTCAGCACACTGGTGGCCGTGGTGTTTTACGTGGTGGTCAAAGTGAGCCTGGACGGGATCAGGCAATGGCGGGCCCGGATCTCGGTTCTAATAGTGGGCTCGGGTCCCGTGGGGCTAACGGCCGCGCTAGTCGCTGTTCGCTCGGGGAAGGTGCTGAAGCTCACGCTGCTGGATGAGAGGTACCGCACGGCGCTGCTCTGCCGCCCCCAGCAGATTGCCCTGGACCCGCGCAGTGTGGAGTTCCTGCTCGAACTGGGGGTGGACTTTGATAACATGGAGGGCTGCTGGCACAACGAGCACTTCTTCACGAAGATAGGAGTGTTTCAAGAGTACCTGCTTAGCATTCTGGAGCAGAAGAGACAGAAGGTGGAAATCAAGGTTCAGCTGGGAACGAAGTTCACAGAGGAGTACCTGCGGAAGATCCCGGGTTCTGATTGGCCGCGTGTGATCGTGGTGGCTGATGGGTCGTGTGGGGACTCATGCTCTGTGCTGGGTATCAGCTCTGACTACACTGTAGAGTCCTGCCACGCATACGGGGCTAATGCCACTATAGAGAGACTGGaccagagacagGTGCCCACCCCAGAGATCCGAGCCCACAGCCTGTTCTTCGACTTGTCTGCGTACGGAGTGGAGGCTCTCAGGGAGCCGAAAAGCTCTGCCGTCAAGCCAGGGTTCCACCTCAAGATCTACGGAACCTTCCGGAACCGCTACATGGCTCTGGTCTGCCCTGCCTCAGACACCAAGATGGTCCGCTTCCTCCGACACACAGCTAACTCCTCGATCATGAAGAACATCTTCCACCAGTCGTTTAATGCGTATAAGACCGACATCGAGCCCCGTCTCAACGACCTGACACTGCACCGCATGCAGTGCAGTAGACGTCTATTTGACATCCAGCTGTCTCACCGGAGAGTCAGTGCCGCCTACATAGAGGGAGACAATGTGTCTGTGACCGTGGAGGGGGAGGCGGTACGGGTGCTCAACTTCGACACAGGTTGTGGGGTGAACCTGGGGATGAGGGGTCTTGAGTCCTTGGGAACATTTATCTACCACACGGCCACGGCTGTGGACCAGAATGACATGTTGGAGGCCCTGTCCGCCAAGATCCAGCACTCCAGACAGGTGGCCGAGACCTTCAGGCAGACTGGTCTGGCACACACCATGTTCGAGTGACACACAGTGACACAAGGGGGCGGAGTGGGACACTGTCTCTAGAGTCCCTGTTTCAGCTGAAAGAGAAAAGTGGCTTTTATATTAAATGTAAAAAAGCTGCTTTACCACCGTTGGCCCATGGATCAGGAGCACAGAGAGGGTTCTGAACAGGAAACATACTCTATGGATGAAtgtacaggaggttggtggcaccttaattggggaagacgggctcgtggtaatggctggagtggaataaggggaatggtatcaaataaatCAAACACATGATTTCCAAGATCTATAGCCTTTATGTATGGTCTGccgtgaggaccaaagcgcataTGTCAGTGTTTCATTTCAGGGATGGGAGTGTCTCGGTGTTCTACAGTGGCTTCCTTCCCTTACCTTCCATCATCCAACCAATCCTGTAGTTTCAGATAGATGGATGATGGACAGGAAGCTGTTAAAGAGCATTGAGATGCAGTCTTGCACTTGATGTTCTGTGGGTTTAACTGAAACTTGAATTGTGTGATGGAGTTTCTTTTTTTCCGGTGGAGTGACCTGTTTTGTGAGATATTCAGTACAGTATGTTCTAATTCTGTGTTTTTGACACCTTTGGTATGTGCCTGGTGCATCGTACAACTCACAAACCTTGGCCATTAGCCAGAAACAAATGGCTTCTGTTGTTACAAACCCTTTACTGCTGAATAATGTTTGAGTAGCTTTTAAGATTCTAGAACTGCCTCTGATTAGGACTTTTAGTATTGTTGAAGGAAGCTGAGTGGCAGGCTGAAAACGTCTGGTCCCTCTCATCTCCACTAATATAAAAAGGCAGGATAGATGAACGCAATATGTGCAGATAAAGGGAAGGCGACAAAGAGAGGAAGCCAGTTTGTACTTTTGGGATTATGCACCCATAGTTCCACAGGAAGATGTGGAAGGAGCTTATTATGGCAGTATGTTCCAATGGGGAAGAAGAGAATTGACTAAGTAGTAACACGTGGGAGAAGGTATCATGTTGAAGTGCCATAAGTACTGGCTCAATCAGTCGTTACCACACCGGACTGATACAAGTGAAGATTGTACTCTTTCTATGgatattgtttgtttgtttaataaAATATATGGTCTTTCAAA
>TU211248
GATCATGAAGAACATCTTCCACCAGTCGTTTAATGCGTATAAGACCGACATCGAGCCCCGTCTCAACGACCTGACACTGCACCGCATGCAGTGCAGTAGACGTCTATTTGACATCCAGCTGTCTCACCGGAGAGTCAGTGCCGCCTACATAGAGGGAGACAATGTGTCTGTGACCGTGGAGGGGGAGGCGGTACGGGTGCTCAACTTCGACACAGGTTGTGGGGTGAACCTGGGGATGAGGGGTCTTGAGTCCTTGGGAACATTTATCTACCACACGGCCACGGCTGTGGACCAGAATGACATGTTGGAGGCCCTGTCCGCCAAGATCCAGCACTCCAGACAGGTGGCCGAGACCTTCAGGCAGACTGGTCTGGCACACACCATGTTCGAGTGACACACAGTGACACAAGGGGGCGGAGTGGGACACTGTCTCTAGAGTCCCTGTTTCAGCTGAAAGAGAAAAGTGGCTTTTATATTAAATGTAAAAAAGCTGCTTTACCACCGTTGGCCCATGGATCAGGAGCACAGAGAGGGTTCTGAACAGGAAACATACTCTATGGATGAAtgtacaggaggttggtggcaccttaattggggaagacgggctcgtggtaatggctggagtggaataaggggaatggtatcaaataaatCAAACACATGATTTCCAAGATCTATAGCCTTTATGTATGGTCTGccgtgaggaccaaagcgcataTGTCAGTGTTTCATTTCAGGGATGGGAGTGTCTCGGTGTTCTACAGTGGCTTCCTTCCCTTACCTTCCATCATCCAACCAATCCTGTAGTTTCAGATAGATGGATGATGGACAGGAAGCTGTTAAAGAGCATTGAGATGCAGTCTTGCACTTGATGTTCTGTGGGTTTAACTGAAACTTGAATTGTGTGATGGAGTTTCTTTTTTTCCGGTGGAGTGACCTGTTTTGTGAGATATTCAGTACAGTATGTTCTAATTCTGTGTTTTTGACACCTTTGGTATGTGCCTGGTGCATCGTACAACTCACAAACCTTGGCCATTAGCCAGAAACAAATGGCTTCTGTTGTTACAAACCCTTTACTGCTGAATAATGTTTGAGTAGCTTTTAAGATTCTAGAACTGCCTCTGATTAGGACTTTTAGTATTGTTGAAGGAAGCTGAGTGGCAGGCTGAAAACGTCTGGTCCCTCTCATCTCCACTAATATAAAAAGGCAGGATAGATGAACGCAATATGTGCAGATAAAGGGAAGGCGACAAAGAGAGGAAGCCAGTTTGTACTTTTGGGATTATGCACCCATAGTTCCACAGGAAGATGTGGAAGGAGCTTATTATGGCAGTATGTTCCAATGGGGAAGAAGAGAATTGACTAAGTAGTAACACGTGGGAGAAGGTATCATGTTGAAGTGCCATAAGTACTGGCTCAATCAGTCGTTACCACACCGGACTGATACAAGTGAAGATTGTACT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106561240 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572453.2 False 3003 mRNA 0.50 5 76321757 76341834
TU211248 True 1463 TUCP 0.47 2 76321807 76323890

Neighbor

gene id symbol gene type direction distance location
LOC110496478 kcp coding downstream 90182 76188320 ~ 76231575 (-)
LOC110496468 LOC106561244 coding downstream 108838 76209339 ~ 76212919 (-)
ppp6r2b ppp6r2 coding downstream 153601 76135363 ~ 76168156 (-)
adm2b adm2 coding downstream 221848 76093170 ~ 76099909 (-)
miox miox coding downstream 251924 76066800 ~ 76069833 (-)
prpf18 prpf18 coding upstream 23837 76365671 ~ 76379828 (-)
LOC100329197 LOC100329197 coding upstream 58386 76400220 ~ 76410715 (-)
chkb chkb coding upstream 74368 76416202 ~ 76434654 (-)
LOC110502016 LOC106561263 coding upstream 115889 76457723 ~ 76516834 (-)
LOC110496606 LOC106561236 coding upstream 223065 76564899 ~ 76570311 (-)
G186220 NA non-coding downstream 5665 76315588 ~ 76316092 (-)
G186215 NA non-coding downstream 12903 76308678 ~ 76308854 (-)
G186216 NA non-coding downstream 14634 76306787 ~ 76307123 (-)
G186211 NA non-coding downstream 17916 76303617 ~ 76303841 (-)
G186191 LOC106561242 non-coding downstream 53446 76266356 ~ 76268311 (-)
G186234 NA non-coding upstream 417 76342251 ~ 76342501 (-)
G186235 NA non-coding upstream 2187 76344021 ~ 76344231 (-)
G186237 NA non-coding upstream 3596 76345430 ~ 76345757 (-)
G186240 NA non-coding upstream 7632 76349466 ~ 76349761 (-)
G186241 NA non-coding upstream 9655 76351489 ~ 76351704 (-)
G186197 LOC106561241 other downstream 28365 76273524 ~ 76293392 (-)
tnni1c LOC106561253 other downstream 332184 75985156 ~ 75989573 (-)
G186002 NA other downstream 443697 75877359 ~ 75878060 (-)
LOC110496186 LOC106561212 other downstream 715109 75595366 ~ 75607735 (-)
LOC110496628 rabl2b other upstream 828129 77166074 ~ 77171661 (-)
G187490 NA other upstream 1128559 77470393 ~ 77471675 (-)
G187579 LOC106561332 other upstream 1361065 77702899 ~ 77703489 (-)
G188257 NA other upstream 2274748 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 2881396 79223230 ~ 79224998 (-)

Expression


Co-expression Network