XLOC_020716


Basic Information

Item Value
gene id XLOC_020716
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2209935 ~ 2433876 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042273
AAAgtacatgtgaacggtttctctttAGTGTGGACTATCTGGTGTCGTTTCAAGTCTCCAGTTTtaataaaactcttcccacacttaaagcacacatgctctctcacaccagtgtggatcttctgatgttttTTTACATGTGACTGATCtataaaactctttccacactcagagcatgaataagGCTTCTCGTTTGTGTGAACTCTAAGATGTTTCCTCAGATCTGAAGGTCTCAAAAATATCTTGCCGCACTGATCACACTTGtgtggcttctctccagtgtggatcagcatGTGATTATTAATGGATGAAGACtgcctgaaactcttcccacactgagtacatgtgtacggtctctctccagtgtgaatcctcttgtGTGTTTTCAATGTTTGTAACCTTCTGAATCTCTTCTCGCAGTGTGgacacttgtacggtctctctccagtgtgcatCCTCTGGTGCAGCTTCAAGTCTTCAGCTCTAAAAAAACTCTTCTTACACTCAGAGCAGACAAACTCTTTCACGCCAGTGTGGATCTTATCATGTTTTCTTAAATATGACAGCagtgtaaaactctttccacactcagcaCAGGAATAAGGCCTCTCCTTCGCATGAACTCTAAGATGTCTCTTCAGAGCTGAAACTATCAAAAACGTTTTGCTGCAGTGATGACATCTGAGTATTTTCTCTCCAGCGTGAGTCATCATGTGACACTTGAGACTGTATTCATAGCTGAAACTCtgtccacactgagtgcaggtgaaactatTCACGGCTGTTCTTTCTATTAAAAAATCTTCAGTCTTTGTCCGAGCTTCAATTTCACtcttgacatgatgtttctcctcttcttcactcagttcttcactctcctccttcacaATCACACCTGAAAATGAATAAGTCACATGTTAATCTGCTAGTGTTTTACACTCTTGAATAGTTTGTAACCGTACAGGCAAACA
>TCONS_00042274
CTGGTGTTGTTTCAAGTCTCCAGCTCtaataaaactcttcccacactgagtacatgcgcacggtttctctccagtgtgaattctctcaTGTCTTCTCAGTGATTGTGGCCAAGCAAATCCCtggtcgcagtgtgaacacttgtacggtttctctccagtgtgcatCATCTGGTGTTGTTTCAAGTTTCCAGAGCtagtaaaactcttcccacactctaAGCACACAAagtctctcacaccagtgtggaccttctgatgtacttttaaataaagtttatgtctaaaactctttccacactcagagcATGAATAAGGCTTCTCGTTTGTGTGAACTCTAAGATGTTTCCTCAGATCTGAAGGTCTCAAAAATATCTTGCCGCACTGATCACACTTGtgtggcttctctccagtgtggatcagcatGTGATTATTAATGGATGAAGACtgcctgaaactcttcccacactgagtacatgtgtacggtctctctccagtgtgaatcctcttgtGTGTTTTCAATGTTTGTAACCTTCTGAATCTCTTCTCGCAGTGTGgacacttgtacggtctctctccagtgtgcatCCTCTGGTGCAGCTTCAAGTCTTCAGCTCTAAAAAAACTCTTCTTACACTCAGAGCAGACAAACTCTTTCACGCCAGTGTGGATCTTATCATGTTTTCTTAAATATGACAGCagtgtaaaactctttccacactcagcaCAGGAATAAGGCCTCTCCTTCGCATGAACTCTAAGATGTCTCTTCAGAGCTGAAACTATCAAAAACGTTTTGCTGCAGTGATGACATCTGAGTATTTTCTCTCCAGCGTGAGTCATCATGTGACACTTGAGACTGTATTCATAGCTGAAACTCtgtccacactgagtgcaggtgaaactatTCACGGCTGTTCTTTCTATTAAAAAATCTTCAGTCTTTGTCCGAGCTTCAATTTCACtcttgacatgatgtttctcctcttcttcactcagttcttcactctcctccttcacaATCACACCTGAAAATGAATAAGTCACATGTTAATCTGCTAGTGTTTTACACTCTTGAATAGTTTGTAACCGTACAGGCAAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042273 False 971 lncRNA 0.41 2 2209935 2257835
TCONS_00042274 True 1101 lncRNA 0.42 2 2209935 2433876

Neighbor

gene id symbol gene type direction distance location
XLOC_020714 NA coding downstream 36594 2124609 ~ 2173341 (-)
XLOC_020713 NA coding downstream 84783 2096780 ~ 2125152 (-)
XLOC_020712 NA coding downstream 122085 2078625 ~ 2087850 (-)
XLOC_020708 NA coding downstream 188462 1960038 ~ 2021473 (-)
XLOC_020709 NA coding downstream 195602 1994728 ~ 2014333 (-)
XLOC_020722 NA coding upstream 32397 2466273 ~ 2482489 (-)
XLOC_020723 NA coding upstream 32463 2466339 ~ 2496857 (-)
XLOC_020724 NA coding upstream 37388 2471264 ~ 2524501 (-)
XLOC_020725 NA coding upstream 87056 2520932 ~ 2539642 (-)
XLOC_020726 NA coding upstream 94907 2528783 ~ 2538625 (-)

Expression


Co-expression Network