LOC110500075 (LOC106561651)


Basic Information

Item Value
gene id LOC110500075
gene name LOC106561651
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94251418 ~ 94258833 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577224.2
AATCCATAAATCTATCATCTCAAATCATAAAATactttttcctctcctctgtcctctgacactcctctcactctctctgattGTCCTCACCTTGAAGGTAACCTGACCGACAGTAGCCATGTCTGAAGGACCGAAAAAGCCAAAGTATTCGGCAACACGCCGACTGCTCCTAAAGACCAAACTGCTGAAAAAGGCAGGGATAATGCTGGTGGCTGAGTTTGCTGACAAGAAACGTGAAAGAGAGAGTGCTCTGAATGAGAGAGCCCCACCCCTCAAACTGTCTGGCCTGTCTGTGCAGGAGCTACAGGACCTTTGTAAAGACCTACACAAAAAGATTGATATCGTAGATGAGGCACGATATGACATGGAAATCAAAGTGGGGAAAAATGATTTAGAGATTAAGTCGCTGACCCAGAAGGTCGATGAGATTAAGGGGTCGAAGAAGCCTACTCTGAAGAGGGTGAAAAAGTCTGCCGCCGACGCCTTGTCGGGAGCCGTGGCCGACACTGGCAAAATGAAGGCTGACTTCACATCCGGCCTCAAGAAAGtcaagaaggaagaggagaagAAAGAAGAGGTGACTGACTGGCGTAAAAATGTGGATGCCATGTCTGGCATGGAGGGCAGAAAGAAGCTGTTTGATGCTGGAAAATAATCAGGGTCATGTTGTACCACCATTAAGAGAGAAGTATGCCAAGACTGTAAGAACCcacaaagaagagagagaggaggtcagtTCTAGATGAGATGTGAATTTCATGTTGTGATATGAAATGAATTTTATAAAGAATCATGTCAACCATGTCAATTTTACGTGTGTGTCCCCTGTTTAATGTGATATGAGAGTTTGCTAGTTCACAGGGAATATTGTTGATATtatatattgtagatatgttatagaTAGTTGTGTTATAAATTATGTGTTGATATAATCAGTTATTTATGATGTATTGGTAGTATCCCTTATGTAAAAAACACATGATTTCAAgtggaaaatcacatgatttcacatgtgaaatttccACGTTTTGCAGATGTAAAAGTGGTATGAACTATGTGGTTTTCGAACACTTCACATATGAGGATATTTCACATTCAATTTCACATGGATTTTCACGTGATCACATGATCTTTCACATGTGAACCAATgtggttttggaacacttcacatgtgattATATTTCACATGAAGTTTCACATGTGGATTCAAATGTTCACTTGTGTATATTTTTCACCTGAGATTTCACAGGTGATGATGCCCTGCATACAATAATTTGTCACAAAATAGTTGCAgtgttttcaacttacatatttgacacacatGATTATATTGTGCATGTTTATTTCAGTGGAggtgaggacggctcataataacagctagaaccatggaaaccatgtgtttgatgttgttgatacctttccacctattctgctccagccattaacaCGTGCCCATCCTCCCCAAGTATGGTACCACCAACTTCctgtatgtttatttatacagTAGTTATTATTCAACACAACCTTCCTGCCATGCCACTATGTCTGTGTCAAtgactgatttcacctgtattcctACACGCTGGACTTTAAGTTAATCTTAGCTTTGAATAATACACTCAAGAAAATCTATtatatttatcatagtgattcaCCAACAtcagacaactatacagaaaaccctcAAGTTGCTGAAATAAGTCAActaaatcaatgatgagagaatagtcagattaaaTGATAACTAAAATCTTAGTTATGCAGGGATGTATTACAGGAAATGAATGTGTAGGGGGGTTTCTGAGAATGGTACAGACTTTGTGGTGCAGCAGAAGGATCAGCGTAGCCCAATTCCCAGTTGGGGTCATATTGAAAAGTCTACTAAGTGATCATGTAAAATGTAATAATTTTTCTATTGGTGAAAGATTTTTGCACTATTTCAGCTGAGCAGCGTACCATTTACCTTAACCCCCACTACCATTTCATTACttccctaacaaacaaaacatgtGAAAGgtgcagtttcacatgtgaaaccatGTATGTTACATTTAGAGTTCATAATTTAACACCTACTTTTCACATGTGACGAGAATAACATTTTGTGAAATTTGCAGATTCACATGTGAAATTTGCAGTTCCACATATGAAAaactttcacatgtgaaaattaAATTCAGCATTTTAATGTGAAAaactttcacatgtggaattgcattTTCAATGTGAAAATCGAATTTGTCACGGTCTTCATCGTTGACTTCTATTTTAGGATAATATGATGATTTCACTTGCCCGAGGTCATTCATTATCCACCTACAAAACATTCTCAGTCCACTCCTTATACGTGTATGTGGAATAAGTACAAACTAAGTGTACGGTCATGTGGTTCACTAGCCTGTTCCGGTTCTGTATAGCAGAATGTATAGCCAACCCTTCTATTGTTGTCATGACATATGAGGCAAGCTGCATTGCATTAAACCTATATCTTACTTTACATTAGTCTTTCCCATCCCTGGgcccccagtacccccaacagtacacatgttTATTGGGACCCTGGACTAGCACCCCTGATTCAACGGatcctcaatgagttgaatgagttgaatgaggtgtgcTTATCCAGGGTCCCAACAACAatgtgttgggggtactggaggtccTGCATATGTGAAATTGCAAGTTCACATGTAAGAAATATTCACATGTGAACATTGAATTTGCAGTTTTACATGTGAAAAACGTTCAAATGTTATCACAGGTGTAGTGTCATGGCATCACATGTTGAAATTTGCATCCTcatgttgtcacatttatttaacttgagatcatgttttcacatgtgaaattcatgtgtttTTCCGTaagggattgtagttctgtaGGTGGATGGATAACTGTCAATATCATCTGAATAGATATTTCAGGTCAGAGCCAGGAATGTGATGATATTAACAGTATCTGTACAGTATCTGAAAAGTTGTATATTTTCAGTTGATTTAGCAAAATAAAAAAAGACGATCGCTACTGAGAGAGTGAAGCCAGGTTATTTTGATGTACAGACTTGGTGTAGCCGACACACATTTCATTTGACTGAATATACAGACTTGCTGTAGGCTACATTACATTTGACTGAATGTACAGACTTGGTGTAGCCTACATACATTTAATTTGACTGAATATACAGACTTGCTATAGGCTACATTACATTTGACTGAATGTACAGACTTGCTGGTGGCTACATTAAATTTGACTGAATATACAGACTTGGTGTACACACTGCTACATTTGACTGAATGGTTTAaaagtgatttatttatttgatatGAATGTAAATGCCACTCCACTATTTAATAAATAGAGCTTGATAGTT

Function

NR:

description
troponin I, slow skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577224.2 True 3376 mRNA 0.38 9 94251418 94258833

Neighbor

gene id symbol gene type direction distance location
LOC110500060 tnni3 coding downstream 7852 94232734 ~ 94243566 (-)
LOC110500065 LOC106561650 coding downstream 21873 94222366 ~ 94229545 (-)
LOC110500043 LOC106561646 coding downstream 30272 94184199 ~ 94221146 (-)
LOC110500013 LOC106561647 coding downstream 70976 94171881 ~ 94180442 (-)
LOC110500006 LOC106561642 coding downstream 110130 94100948 ~ 94141288 (-)
LOC110500125 LOC106561674 coding upstream 89685 94348518 ~ 94359922 (-)
LOC110500132 LOC106561675 coding upstream 105182 94364015 ~ 94367194 (-)
LOC110500153 LOC106561673 coding upstream 153411 94412244 ~ 94417008 (-)
LOC110500221 LOC106561669 coding upstream 267715 94526548 ~ 94529608 (-)
asb13b LOC106561665 coding upstream 345211 94604044 ~ 94611792 (-)
G206674 NA non-coding downstream 106639 94144456 ~ 94144779 (-)
G206673 NA non-coding downstream 107655 94143417 ~ 94143763 (-)
G206672 NA non-coding downstream 108185 94142744 ~ 94143233 (-)
G206669 NA non-coding downstream 117007 94132849 ~ 94134411 (-)
G206722 NA non-coding upstream 14299 94273132 ~ 94273456 (-)
G206725 NA non-coding upstream 25294 94284127 ~ 94291287 (-)
G206737 NA non-coding upstream 49321 94308154 ~ 94308507 (-)
G206738 LOC106561643 non-coding upstream 50137 94308970 ~ 94309192 (-)
G206741 NA non-coding upstream 53055 94311888 ~ 94312170 (-)
G205192 NA other downstream 1288484 92962044 ~ 92962934 (-)
LOC110499897 LOC106573100 other downstream 1811817 92398054 ~ 92443838 (-)
G204024 NA other downstream 2463315 91787187 ~ 91788103 (-)
G203915 rassf9 other downstream 2660369 91589212 ~ 91591049 (-)
G202279 NA other downstream 3809993 90377557 ~ 90441425 (-)
G206742 LOC106561643 other upstream 53591 94312424 ~ 94312774 (-)
G206744 LOC106561643 other upstream 54557 94313390 ~ 94313918 (-)
G206750 NA other upstream 69077 94327910 ~ 94328183 (-)
G207244 LOC100194703 other upstream 358082 94616915 ~ 94617232 (-)
G207249 NA other upstream 370604 94629437 ~ 94629739 (-)

Expression


Co-expression Network